RetrogeneDB ID: | retro_dord_709 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_59354:5754..6236(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cbx1 | ||
Ensembl ID: | ENSDORG00000000716 | ||
Aliases: | None | ||
Description: | chromobox 1 [Source:MGI Symbol;Acc:MGI:105369] |
Percent Identity: | 62.87 % |
Parental protein coverage: | 87.57 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | EEEEYVVEKVLDRRVVKGKVEYLL-KWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDKSEGGKR |
EEEE.V.EKVL...VVKGKVEYLL.K.KG.S.EDNTWEPE.NL.CP.L..EF..S....H...KSEGGK. | |
Retrocopy | EEEENVAEKVLHHQVVKGKVEYLL<KRKGLSNEDNTWEPEGNLHCPYLTVEF--SLRK*HKKQKSEGGKC |
Parental | KADSDSED-KGEESKPKKKKEESEKPRGFA-RGLEPERIIGATDSSGELMFLMKWKNSDEADLVPA-KEA |
KAD.DSED..GEESKPKK..E...K..GF...GLEPE.I.GATDSSGELM.LMKW.NSD.ADL....... | |
Retrocopy | KADYDSED>YGEESKPKKT*ELG-KSQGFS<SGLEPEPITGATDSSGELMLLMKWMNSDDADLSSS*QGS |
Parental | NVKCPQVVISFYEE-RLTWHSYPSEDD |
....P........E.RLTWHSYPSEDD | |
Retrocopy | QCQVPTGCVRSFSEERLTWHSYPSEDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004890 | 2 retrocopies | |
Bos taurus | ENSBTAG00000002949 | 9 retrocopies | |
Callithrix jacchus | ENSCJAG00000007532 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000000716 | 2 retrocopies |
retro_dord_594, retro_dord_709 ,
|
Dipodomys ordii | ENSDORG00000005487 | 11 retrocopies | |
Erinaceus europaeus | ENSEEUG00000004874 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000000203 | 7 retrocopies | |
Felis catus | ENSFCAG00000006056 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005030 | 2 retrocopies | |
Mus musculus | ENSMUSG00000018666 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008021 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000005658 | 9 retrocopies | |
Ochotona princeps | ENSOPRG00000003699 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008891 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008689 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008192 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023986 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000004769 | 2 retrocopies |