RetrogeneDB ID: | retro_dord_629 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_42861:10379..10792(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cbx3 | ||
Ensembl ID: | ENSDORG00000005487 | ||
Aliases: | None | ||
Description: | chromobox 3 [Source:MGI Symbol;Acc:MGI:108515] |
Percent Identity: | 82.01 % |
Parental protein coverage: | 74.86 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | YFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAG-KEKDGTKR-KSLSDSESDDSKSKKKRDTADKP |
.FLK.KGFTDADN.W.PEE.LDC.ELIEAFLNSQKAG.K.K...K..KSLSDSESDDSKSKK.RDTA.KP | |
Retrocopy | HFLK*KGFTDADNPWKPEEHLDCTELIEAFLNSQKAG>KTKGWYKK>KSLSDSESDDSKSKKQRDTANKP |
Parental | RGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
RGFARGLDPE.I.GATDS.GELMFLMKWKDS.EA.LVL.KEANMKCP.IV.A.YE.RLTWHSCPEDEAQ | |
Retrocopy | RGFARGLDPEQIVGATDSTGELMFLMKWKDSNEANLVLTKEANMKCP*IVNALYEDRLTWHSCPEDEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002897 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000007952 | 8 retrocopies | |
Dipodomys ordii | ENSDORG00000000716 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000005487 | 11 retrocopies |
retro_dord_309, retro_dord_405, retro_dord_437, retro_dord_440, retro_dord_456, retro_dord_502, retro_dord_629 , retro_dord_630, retro_dord_655, retro_dord_700, retro_dord_780,
|
Loxodonta africana | ENSLAFG00000006907 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000007591 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029836 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016583 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011713 | 9 retrocopies | |
Pongo abelii | ENSPPYG00000017714 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000011814 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017913 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016711 | 4 retrocopies |