RetrogeneDB ID: | retro_dord_309 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_109962:649..1078(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cbx3 | ||
Ensembl ID: | ENSDORG00000005487 | ||
Aliases: | None | ||
Description: | chromobox 3 [Source:MGI Symbol;Acc:MGI:108515] |
Percent Identity: | 65.31 % |
Parental protein coverage: | 80.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDS |
EE..V.KVLDR.VVNGKV.Y.LKWKG..DADN.WEPEENL.CP.L..AF.NSQKAG..K.GTKRK..S.S | |
Retrocopy | EEYEVKKVLDRQVVNGKVKYLLKWKGYSDADNSWEPEENLHCPKLVKAFFNSQKAGEGKNGTKRKFISES |
Parental | ESDDSKSKKKRDTADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAF |
.SD..KSKKK.......RG....L..E.I.GAT...GELMF..KWKDS...DLVLAKEA..KCPQ.VIAF | |
Retrocopy | KSDARKSKKKKYAKGFARG----LMAEQILGATNIFGELMFVIKWKDSNKNDLVLAKEAHVKCPQVVIAF |
Parental | YEERLTW |
YE..LTW | |
Retrocopy | YEKNLTW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002897 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000007952 | 8 retrocopies | |
Dipodomys ordii | ENSDORG00000000716 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000005487 | 11 retrocopies |
retro_dord_309 , retro_dord_405, retro_dord_437, retro_dord_440, retro_dord_456, retro_dord_502, retro_dord_629, retro_dord_630, retro_dord_655, retro_dord_700, retro_dord_780,
|
Loxodonta africana | ENSLAFG00000006907 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000007591 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029836 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016583 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011713 | 9 retrocopies | |
Pongo abelii | ENSPPYG00000017714 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000011814 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017913 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016711 | 4 retrocopies |