Parental gene:

RPL13A, ENSG00000142541

Aliases:RPL13A, L13A, TSTA1
Description:ribosomal protein L13a [Source:HGNC Symbol;Acc:10304]
Organism:Human (Homo sapiens)
Coordinates:19:49990810..49995565(+)


>ENSG00000142541
ATGGCGGAGGTGCAGGTCCTGGTGCTTGATGGTCGAGGCCATCTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGT
ACTGCTGGGCCGGAAGGTGGTGGTCGTACGCTGTGAAGGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGT
ACCTGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTCCCGAGGCCCCTACCACTTCCGGGCCCCCAGCCGCATCTTC
TGGCGGACCGTGCGAGGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCCGCTCTGGACCGTCTCAAGGTGTTTGACGG
CATCCCACCGCCCTACGACAAGAAAAAGCGGATGGTGGTTCCTGCTGCCCTCAAGGTCGTGCGTCTGAAGCCTACAAGAA
AGTTTGCCTATCTGGGGCGCCTGGCTCACGAGGTTGGCTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGAGG
AAAGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGGAGAA
GAAAATTGACAAATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGA

Library Parental gene expression (RPM)
bodymap2_adipose 967 .42 RPM
bodymap2_adrenal 1518 .40 RPM
bodymap2_brain 156 .35 RPM
bodymap2_breast 689 .11 RPM
bodymap2_colon 1303 .66 RPM
bodymap2_heart 269 .24 RPM
bodymap2_kidney 446 .76 RPM
bodymap2_liver 328 .33 RPM
bodymap2_lung 1095 .62 RPM
bodymap2_lymph_node 1494 .82 RPM
bodymap2_ovary 1466 .56 RPM
bodymap2_prostate 1422 .20 RPM
bodymap2_skeletal_muscle 598 .29 RPM
bodymap2_testis 649 .24 RPM
bodymap2_thyroid 674 .57 RPM
bodymap2_white_blood_cells 1717 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005296 possible_ortholog 3 retrogenes
retro_btau_1251, retro_btau_719, retro_btau_789,
Canis familiaris ENSCAFG00000029892 possible_ortholog 3 retrogenes
retro_cfam_1772, retro_cfam_924, retro_cfam_976,
Callithrix jacchus ENSCJAG00000000072 possible_ortholog 16 retrogenes
retro_cjac_1130, retro_cjac_1706, retro_cjac_182, retro_cjac_197, retro_cjac_1997, retro_cjac_2170, retro_cjac_2322, retro_cjac_2467, retro_cjac_2468, retro_cjac_2665, retro_cjac_2699, retro_cjac_2755, retro_cjac_3009, retro_cjac_664, retro_cjac_941, retro_cjac_972,
Echinops telfairi ENSETEG00000017076 possible_ortholog 2 retrogenes
retro_etel_46, retro_etel_853,
Loxodonta africana ENSLAFG00000016213 ortholog_one2one 3 retrogenes
retro_lafr_1160, retro_lafr_576, retro_lafr_810,
Mus musculus ENSMUSG00000074129 possible_ortholog 3 retrogenes
retro_mmus_1129, retro_mmus_1334, retro_mmus_20,
Pteropus vampyrus ENSPVAG00000010958 ortholog_one2one 3 retrogenes
retro_pvam_129, retro_pvam_625, retro_pvam_771,
Rattus norvegicus ENSRNOG00000020618 possible_ortholog 10 retrogenes
retro_rnor_1073, retro_rnor_1112, retro_rnor_1212, retro_rnor_1292, retro_rnor_1357, retro_rnor_1742, retro_rnor_564, retro_rnor_593, retro_rnor_665, retro_rnor_988,
Sus scrofa ENSSSCG00000003166 possible_ortholog 4 retrogenes
retro_sscr_290, retro_sscr_300, retro_sscr_392, retro_sscr_743,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_293 73.33 87.19
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2. retro_hsap_298 85.29 100.00
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3. retro_hsap_397 76.92 95.07
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4. retro_hsap_436 68.14 53.33
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5. retro_hsap_615 99.51 100.00
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6. retro_hsap_671 69.46 98.03
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7. retro_hsap_730 91.63 100.00
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8. retro_hsap_753 84.56 67.00
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9. retro_hsap_967 93.10 100.00
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10. retro_hsap_1072 86.58 72.91
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11. retro_hsap_1100 95.07 99.51
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12. retro_hsap_1111 54.95 53.20
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13. retro_hsap_1268 97.54 100.00
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14. retro_hsap_1410 89.34 60.10
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15. retro_hsap_2200 70.69 84.73
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16. retro_hsap_2500 93.69 100.00
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17. retro_hsap_3173 82.64 59.11
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18. retro_hsap_3350 79.80 99.51
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19. retro_hsap_3444 72.94 82.27
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20. retro_hsap_3652 70.69 56.65
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21. retro_hsap_3752 77.59 54.76
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22. retro_hsap_3772 83.19 58.62
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Download FASTA sequences of all ENSG00000142541 retrocopies