RetrogeneDB ID: | retro_rnor_1357 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 18:60419032..60419641(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl13a | ||
Ensembl ID: | ENSRNOG00000020618 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L13a [Source:RefSeq peptide;Acc:NP_775462] |
Percent Identity: | 97.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAEGQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGP |
MAEGQVLVLDG..HLL..LAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFL.KRMNTNPSRGP | |
Retrocopy | MAEGQVLVLDGWSHLLVCLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFL*KRMNTNPSRGP |
Parental | YHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGR |
YHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGR | |
Retrocopy | YHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGR |
Parental | LAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVLKTNGLLV |
LAHEVG.KYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVLKTNGLLV | |
Retrocopy | LAHEVG*KYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVLKTNGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .36 RPM | 134 .95 RPM |
SRP017611_kidney | 0 .56 RPM | 155 .20 RPM |
SRP017611_liver | 0 .34 RPM | 89 .29 RPM |