RetrogeneDB - Parental gene ENSCJAG00000000072 details

							
>ENSCJAG00000000072
ATGGCGGAGGTGCAGGTCCTGGTGCTTGATGGTCGAGGCCATCTCCTGGGCCGCCTGGCAGCCATCGTGGCTAAGCAGGT

ACTGCTGGGCCGGAAGGTGGTGGTCGTTCGCTGCGAGGGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGT

ACCTGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTCCCGAGGCCCCTACCACTTCCGGGCCCCCAGCCGCATCTTC

TGGCGGACCGTGCGAGGCATGCTGCCCCACAAGACCAAGCGAGGCCAGGCCGCCTTGGACCGCCTAAAGGTTTTTGATGG

CATCCCACCGCCCTACGACAAGAAAAAGCGGATGGTGGTTCCTGCGGCCCTCAAGGTTGTACGTCTGAAGCCCACAAGGA

AGTTTGCCTATCTCGGGCGCCTGGCTCACGAGGTTGGCTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGAGG

AAGGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAAGCCGAGAAGAATGTGGAGAA

GAAAATTAACAAATACACAGAGGTCCTCAAGACCCATGGACTCCTGGTCTGA

Library	Parental gene expression (RPM)
SRP051959_spleen	377 .88 RPM
SRP051959_skeletal_muscle	345 .41 RPM
SRP051959_lymph_node	516 .94 RPM
SRP051959_lung	328 .90 RPM
SRP051959_liver	286 .16 RPM
SRP051959_kidney	225 .32 RPM
SRP051959_heart	251 .83 RPM
SRP051959_colon	232 .26 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000014027	possible_ortholog	2 retrogenes	retro_amel_1332, retro_amel_1720,
Bos taurus	ENSBTAG00000005296	possible_ortholog	3 retrogenes	retro_btau_1251, retro_btau_719, retro_btau_789,
Canis familiaris	ENSCAFG00000029892	possible_ortholog	3 retrogenes	retro_cfam_1772, retro_cfam_924, retro_cfam_976,
Cavia porcellus	ENSCPOG00000012417	possible_ortholog	2 retrogenes	retro_cpor_1000, retro_cpor_888,
Equus caballus	ENSECAG00000015832	possible_ortholog	3 retrogenes	retro_ecab_388, retro_ecab_653, retro_ecab_773,
Erinaceus europaeus	ENSEEUG00000014071	possible_ortholog	6 retrogenes	retro_eeur_168, retro_eeur_310, retro_eeur_315, retro_eeur_484, retro_eeur_562, retro_eeur_618,
Echinops telfairi	ENSETEG00000017076	possible_ortholog	2 retrogenes	retro_etel_46, retro_etel_853,
Felis catus	ENSFCAG00000009194	possible_ortholog	4 retrogenes	retro_fcat_1197, retro_fcat_1649, retro_fcat_324, retro_fcat_548,
Homo sapiens	ENSG00000142541	possible_ortholog	22 retrogenes	retro_hsap_1072, retro_hsap_1100, retro_hsap_1111, retro_hsap_1268, retro_hsap_1410, retro_hsap_2200, retro_hsap_2500, retro_hsap_293, retro_hsap_298, retro_hsap_3173, retro_hsap_3350, retro_hsap_3444, retro_hsap_3652, retro_hsap_3752, retro_hsap_3772, retro_hsap_397, retro_hsap_436, retro_hsap_615, retro_hsap_671, retro_hsap_730, retro_hsap_753, retro_hsap_967,
Gorilla gorilla	ENSGGOG00000002932	possible_ortholog	11 retrogenes	retro_ggor_12, retro_ggor_1739, retro_ggor_214, retro_ggor_2271, retro_ggor_2737, retro_ggor_334, retro_ggor_6, retro_ggor_615, retro_ggor_627, retro_ggor_846, retro_ggor_869,
Loxodonta africana	ENSLAFG00000016213	possible_ortholog	3 retrogenes	retro_lafr_1160, retro_lafr_576, retro_lafr_810,
Microcebus murinus	ENSMICG00000009318	possible_ortholog	6 retrogenes	retro_mmur_240, retro_mmur_283, retro_mmur_311, retro_mmur_359, retro_mmur_65, retro_mmur_736,
Myotis lucifugus	ENSMLUG00000004945	possible_ortholog	10 retrogenes	retro_mluc_1015, retro_mluc_1342, retro_mluc_1836, retro_mluc_1894, retro_mluc_2219, retro_mluc_2221, retro_mluc_2427, retro_mluc_2471, retro_mluc_2506, retro_mluc_675,
Macaca mulatta	ENSMMUG00000007551	possible_ortholog	14 retrogenes	retro_mmul_1100, retro_mmul_1256, retro_mmul_1638, retro_mmul_1756, retro_mmul_2179, retro_mmul_2249, retro_mmul_2352, retro_mmul_2399, retro_mmul_296, retro_mmul_500, retro_mmul_520, retro_mmul_547, retro_mmul_837, retro_mmul_924,
Mustela putorius furo	ENSMPUG00000002604	possible_ortholog	3 retrogenes	retro_mputfur_1418, retro_mputfur_853, retro_mputfur_935,
Mus musculus	ENSMUSG00000074129	possible_ortholog	3 retrogenes	retro_mmus_1129, retro_mmus_1334, retro_mmus_20,
Nomascus leucogenys	ENSNLEG00000005211	possible_ortholog	23 retrogenes	retro_nleu_1173, retro_nleu_1429, retro_nleu_1568, retro_nleu_159, retro_nleu_1823, retro_nleu_1873, retro_nleu_1892, retro_nleu_1897, retro_nleu_2047, retro_nleu_228, retro_nleu_2398, retro_nleu_2415, retro_nleu_2463, retro_nleu_2614, retro_nleu_2789, retro_nleu_2928, retro_nleu_330, retro_nleu_392, retro_nleu_441, retro_nleu_475, retro_nleu_513, retro_nleu_744, retro_nleu_760,
Oryctolagus cuniculus	ENSOCUG00000025258	possible_ortholog	9 retrogenes	retro_ocun_1038, retro_ocun_1077, retro_ocun_1392, retro_ocun_1462, retro_ocun_304, retro_ocun_674, retro_ocun_756, retro_ocun_786, retro_ocun_972,
Otolemur garnettii	ENSOGAG00000004625	possible_ortholog	7 retrogenes	retro_ogar_1496, retro_ogar_211, retro_ogar_2254, retro_ogar_3148, retro_ogar_54, retro_ogar_596, retro_ogar_612,
Ochotona princeps	ENSOPRG00000001194	possible_ortholog	3 retrogenes	retro_opri_316, retro_opri_764, retro_opri_806,
Procavia capensis	ENSPCAG00000004086	possible_ortholog	4 retrogenes	retro_pcap_163, retro_pcap_290, retro_pcap_415, retro_pcap_416,
Pongo abelii	ENSPPYG00000010251	possible_ortholog	1 retrogene	retro_pabe_148,
Pan troglodytes	ENSPTRG00000011298	possible_ortholog	1 retrogene	retro_ptro_31,
Pteropus vampyrus	ENSPVAG00000010958	possible_ortholog	3 retrogenes	retro_pvam_129, retro_pvam_625, retro_pvam_771,
Rattus norvegicus	ENSRNOG00000020618	possible_ortholog	10 retrogenes	retro_rnor_1073, retro_rnor_1112, retro_rnor_1212, retro_rnor_1292, retro_rnor_1357, retro_rnor_1742, retro_rnor_564, retro_rnor_593, retro_rnor_665, retro_rnor_988,
Sus scrofa	ENSSSCG00000003166	possible_ortholog	4 retrogenes	retro_sscr_290, retro_sscr_300, retro_sscr_392, retro_sscr_743,
Tupaia belangeri	ENSTBEG00000016579	possible_ortholog	3 retrogenes	retro_tbel_2417, retro_tbel_4071, retro_tbel_958,
Tarsius syrichta	ENSTSYG00000008791	possible_ortholog	4 retrogenes	retro_tsyr_1363, retro_tsyr_437, retro_tsyr_620, retro_tsyr_920,
Tursiops truncatus	ENSTTRG00000005485	possible_ortholog	7 retrogenes	retro_ttru_1304, retro_ttru_1736, retro_ttru_629, retro_ttru_735, retro_ttru_833, retro_ttru_971, retro_ttru_995,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_182	62.39	53.69	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_197	97.89	69.95	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_664	87.86	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_941	80.16	62.07	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_972	60.00	98.03	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_1130	78.43	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_1706	70.00	98.03	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cjac_1997	77.56	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cjac_2170	94.39	96.06	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cjac_2322	89.27	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_cjac_2467	79.51	100.00	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_cjac_2468	69.05	61.08	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_cjac_2665	97.04	100.00	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_cjac_2699	91.78	71.92	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_cjac_2755	63.43	84.73	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_cjac_3009	68.15	66.50	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000000072 retrocopies

Parental gene:	ENSCJAG00000000072
Aliases:	None
Description:	None
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	22:41373386..41377706(+)

Parental gene:

ENSCJAG00000000072