RetrogeneDB ID: | retro_pvam_771 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_11222:44312..44803(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSPVAG00000010958 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 63.64 % |
Parental protein coverage: | 79.8 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | MAESQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGP |
MAE.QVLV.DG.GHLLG.L.AIVAKQVLLG...V.V..EG.NISGNF.RNKLKYL.FL....N.NPS... | |
Retrocopy | MAEGQVLVFDG*GHLLGHLVAIVAKQVLLGQETVAVCHEGVNISGNF*RNKLKYLVFLLNQLNANPSWST |
Parental | YHFRAPSRIFWRTVRGMLPH-KTKRGQAALDR-LKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYL |
Y.F.APS.IFWRT..GM.P...T.R........LKVFDGI.P.YDKKK.MVV..AL..V.LK.T.KF.YL | |
Retrocopy | YLF*APSLIFWRTTQGMPPQTRTSRARLPWTACLKVFDGILPSYDKKK*MVVLVALNIVHLKHTWKFFYL |
Parental | GRLAHEVGWKY-QAVTATLEEKRKE |
GRLA.EVG.KY.QAVT...EE...E | |
Retrocopy | GRLAYEVG*KY<QAVTVEEEEEGQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |