RetrogeneDB ID: | retro_cjac_2468 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:119194344..119194711(-) | ||
Located in intron of: | ENSCJAG00000004049 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000000072 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.05 % |
Parental protein coverage: | 61.08 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KRMNTNPSRGPYHFRA-PSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDK-KKRMVVPAALKVV |
K.MN.NPS.GP.HF.A.PS.IFW.T..GML..KTK.GQAA.D.LKVF.GIP.P.D..K.RMV.P.A.KV. | |
Retrocopy | K*MNINPSLGP-HFQA>PSCIFWQTA*GMLSCKTKQGQAAPDHLKVFNGIPLPFDSGKTRMVLPSAPKVL |
Parental | RLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEK |
.LKP.RKFAYL..LA.EVG.KYQAVTAT..EKRKE.A.IHY.KKK.LM.LRKQAE. | |
Retrocopy | CLKPMRKFAYL*YLAQEVGCKYQAVTAT-QEKRKE-ANIHYWKKKHLMMLRKQAER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .75 RPM | 232 .26 RPM |
SRP051959_heart | 0 .32 RPM | 251 .83 RPM |
SRP051959_kidney | 1 .58 RPM | 225 .32 RPM |
SRP051959_liver | 1 .36 RPM | 286 .16 RPM |
SRP051959_lung | 0 .70 RPM | 328 .90 RPM |
SRP051959_lymph_node | 1 .28 RPM | 516 .94 RPM |
SRP051959_skeletal_muscle | 0 .11 RPM | 345 .41 RPM |
SRP051959_spleen | 0 .74 RPM | 377 .88 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3652 |