RetrogeneDB ID: | retro_cjac_2467 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:117403842..117404446(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000000072 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MAEVQVLVLDGRGHLL-GRLAAI-VAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSR |
M.EV.VLVLDG.G.L..G.LAAI..AK.VLLG.KVVVV.CEGINISGNFYRNKL..LAFLRKR.NTNPSR | |
Retrocopy | MVEVYVLVLDG*GPLP<GCLAAI<LAKEVLLGQKVVVVCCEGINISGNFYRNKL*DLAFLRKRINTNPSR |
Parental | GPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYL |
GPY.F.A.S..F.RTVRGMLPHKTK.GQAALDRLKVF..IPPPYDKKKR.VV.AALKVV.LK.TR.FAYL | |
Retrocopy | GPYWFQAHSGMF*RTVRGMLPHKTK*GQAALDRLKVFHCIPPPYDKKKRLVVLAALKVVGLKSTRQFAYL |
Parental | GRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKINKYTEVLKTHGLLV |
GRLAHEVG.KYQ.VTAT..E.RKEKAKIHYRKKKQL.R.RKQA.KNVEKK..KY.E..KTHGLLV | |
Retrocopy | GRLAHEVGSKYQTVTAT-QERRKEKAKIHYRKKKQLVRVRKQAKKNVEKKSDKYKEIFKTHGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 232 .26 RPM |
SRP051959_heart | 0 .00 RPM | 251 .83 RPM |
SRP051959_kidney | 0 .00 RPM | 225 .32 RPM |
SRP051959_liver | 0 .00 RPM | 286 .16 RPM |
SRP051959_lung | 0 .02 RPM | 328 .90 RPM |
SRP051959_lymph_node | 0 .00 RPM | 516 .94 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 345 .41 RPM |
SRP051959_spleen | 0 .00 RPM | 377 .88 RPM |