RetrogeneDB ID: | retro_lafr_576 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_22:28950915..28951345(-) | ||
Located in intron of: | ENSLAFG00000014889 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSLAFG00000016213 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.6 % |
Parental protein coverage: | 71.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | MAEGQVLVLDGR-GHLLGRLAAI-VAKQVL-LGRKVVVVRCEGINISGNFYRN-KLKYLAFLRKRMNTNP |
MA.GQVL.L.G..GHLL..LAAI..AKQ.L.LG.K.V.V.CEGIN.S.NFYRN.KLKYLA...K.MNTN. | |
Retrocopy | MAKGQVLKLNGE<GHLLSHLAAI<LAKQGL<LGGKAVIVYCEGINTSSNFYRN>KLKYLASPLKCMNTNS |
Parental | SRGP-YHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKR-MVVPAALKVVRLKPTRK |
..G..YHF..PS..FW.T...MLP.K.K..Q..L..LK.F.GI.P....K.R.M.VPAALKV..LKPT.K | |
Retrocopy | PHGL>YHFQVPSHVFWLTM*CMLPQKAKCDQTTLGHLKEFIGI-PSWIRKSR<MAVPAALKVTNLKPTCK |
Parental | FAYLGRLAHEV |
F..LG.LA..V | |
Retrocopy | FICLGCLAGKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |