RetrogeneDB ID: | retro_cjac_1130 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 13:36045164..36045771(-) | ||
Located in intron of: | ENSCJAG00000002575 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000000072 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGP |
M.EVQVLVLDGR.HLLGRL.AI..KQVLLGRKVVVV.CEGINIS.NFYRN.LKYLAFL.K.MNTNP..GP | |
Retrocopy | MVEVQVLVLDGRNHLLGRLEAIMGKQVLLGRKVVVVCCEGINISRNFYRNELKYLAFLCKQMNTNPFQGP |
Parental | YHFRAPSRIFWRTVRGML-PHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLG |
YHF.APSRIFW.TV.GML.P............L..FDGIP.PYD.KKRMVVPAALKVV.LKPTRKFAYLG | |
Retrocopy | YHFQAPSRIFWPTVQGML>PRRPREARPPWTALR-FDGIPLPYDEKKRMVVPAALKVVCLKPTRKFAYLG |
Parental | RLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKINKYTEVLKTHGLLV |
R.A.E.GWKYQAVTATLEEKRKEKAKIHY.KKKQL.RL.KQAEKNVEKK..K.TEVLK.HGLL. | |
Retrocopy | RQAYEIGWKYQAVTATLEEKRKEKAKIHYQKKKQLRRL*KQAEKNVEKKTDKHTEVLKIHGLLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .62 RPM | 232 .26 RPM |
SRP051959_heart | 0 .68 RPM | 251 .83 RPM |
SRP051959_kidney | 0 .60 RPM | 225 .32 RPM |
SRP051959_liver | 0 .22 RPM | 286 .16 RPM |
SRP051959_lung | 0 .44 RPM | 328 .90 RPM |
SRP051959_lymph_node | 0 .91 RPM | 516 .94 RPM |
SRP051959_skeletal_muscle | 0 .87 RPM | 345 .41 RPM |
SRP051959_spleen | 0 .82 RPM | 377 .88 RPM |