RetrogeneDB ID: | retro_mmus_1129 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:84973711..84974317(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl13a | ||
Ensembl ID: | ENSMUSG00000074129 | ||
Aliases: | Rpl13a, 1810026N22Rik, Tstap198-7, tum-antigen | ||
Description: | ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455] |
Percent Identity: | 73.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MAEGQVLVLDGRGHLLGRLAA-IVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG |
M.EGQVLVL.G.GHLLG.L.A..V....L....V..V.CEGINIS..FYRNKLKYLAFL.K.MNTNPS.. | |
Retrocopy | MVEGQVLVLGGQGHLLGLLEA>VVKQVLLDLKVVI-VHCEGINISKHFYRNKLKYLAFLQKQMNTNPSQD |
Parental | PYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLG |
.YHF.APS.IFW..V.GMLPHKTK.GQAAL.RLKVLDGIPP..DKKK.MVVPAALKVV.LKPTRKFAYL. | |
Retrocopy | LYHF*APSPIFWNSV*GMLPHKTKKGQAALQRLKVLDGIPPSHDKKKWMVVPAALKVVCLKPTRKFAYLV |
Parental | RLAHEVGWKYQAVTATLEEKRKEKAK-MHYRKKKQILRLRKQAEKNVEKKICKFTEVLKTNGLLV |
.LA.EV..K.QAVTATLEE..KEKAK..HY.KKKQ.LRL...A.KN.EKKIC.F.EVLKTNGLLV | |
Retrocopy | HLAYEVMLKFQAVTATLEERWKEKAK<IHYWKKKQLLRLLQ*AKKNLEKKICNFIEVLKTNGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 173 .82 RPM |
SRP007412_cerebellum | 0 .00 RPM | 165 .87 RPM |
SRP007412_heart | 0 .00 RPM | 193 .19 RPM |
SRP007412_kidney | 0 .02 RPM | 234 .92 RPM |
SRP007412_liver | 0 .00 RPM | 237 .86 RPM |
SRP007412_testis | 0 .00 RPM | 139 .37 RPM |