RetrogeneDB ID: | retro_cjac_2322 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:31919927..31920538(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000003242 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000000072 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGP |
MAEVQVLVLDG.GHLLGRLAAIVAKQVLLG.KVVVVRCE...ISGNFYRNKLKYLAFL.KRMNTNPSRG. | |
Retrocopy | MAEVQVLVLDGQGHLLGRLAAIVAKQVLLGGKVVVVRCEAVSISGNFYRNKLKYLAFLHKRMNTNPSRGL |
Parental | YHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGI-PP-PYDKKKRMVVPAALKVVRLKPTRKFAYL |
YHFRAPS.IFW.TV.GMLPHKTKRGQAALD.L.VFDGI.PP.PYDKKKRMVVPAALKVVRLKP.RKFAYL | |
Retrocopy | YHFRAPSHIFWWTVQGMLPHKTKRGQAALDLLRVFDGISPP<PYDKKKRMVVPAALKVVRLKPSRKFAYL |
Parental | GRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKINKYTEVLKTHGLLV |
GRLAH.VGWK.Q.VT.TLEEKRKEKAKI.YRKKKQLMRLRKQ.EKNVEKKI.KYTEVLKTHGLLV | |
Retrocopy | GRLAHKVGWKHQEVTTTLEEKRKEKAKIQYRKKKQLMRLRKQTEKNVEKKIDKYTEVLKTHGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .02 RPM | 232 .26 RPM |
SRP051959_heart | 0 .07 RPM | 251 .83 RPM |
SRP051959_kidney | 0 .07 RPM | 225 .32 RPM |
SRP051959_liver | 0 .06 RPM | 286 .16 RPM |
SRP051959_lung | 0 .03 RPM | 328 .90 RPM |
SRP051959_lymph_node | 0 .02 RPM | 516 .94 RPM |
SRP051959_skeletal_muscle | 0 .04 RPM | 345 .41 RPM |
SRP051959_spleen | 0 .06 RPM | 377 .88 RPM |