RetrogeneDB ID: | retro_rnor_1112 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 15:60191613..60191955(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl13a | ||
Ensembl ID: | ENSRNOG00000020618 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L13a [Source:RefSeq peptide;Acc:NP_775462] |
Percent Identity: | 70.18 % |
Parental protein coverage: | 56.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAEGQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGP |
MAEGQVL.LDG.GHLLG.L.A.V.KQVLLG.KVVV...EGINISGN.YRNKLKYL.FL.K.M..NPSRGP | |
Retrocopy | MAEGQVLLLDGQGHLLGCLVATVDKQVLLGWKVVVIHSEGINISGNLYRNKLKYLPFL*KQMDINPSRGP |
Parental | YHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDK |
YH.R.PS.IFW....GML..K.K.GQ.AL..LKV.D..PPPY.K | |
Retrocopy | YHLRPPS*IFWLSIQGMLSSKNKIGQVALKGLKVMDRVPPPYNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 155 .20 RPM |
SRP017611_liver | 0 .00 RPM | 89 .29 RPM |