RetrogeneDB ID: | retro_pvam_625 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_414:12256..12842(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSPVAG00000010958 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 81.19 % |
Parental protein coverage: | 98.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVV-RCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHF |
QVLVL.G.GHLL.R....VAKQVLL..KVVVV.R.EGINISGNFYR.KLKYLAFL.KRMNTNP.R.PYHF | |
Retrocopy | QVLVLEG*GHLLSRT---VAKQVLLSQKVVVVVRWEGINISGNFYRKKLKYLAFLCKRMNTNPCRSPYHF |
Parental | RA-PSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLG-RL |
RA..S..FW.TVRG.LPHKTKRGQA.LDRLKVFDGIPP.Y.KKKR.VVPAALKV...KPT.KFA..G.RL | |
Retrocopy | RA<QSHVFWQTVRGVLPHKTKRGQAVLDRLKVFDGIPPHYVKKKRVVVPAALKVECQKPTLKFACSG<RL |
Parental | AHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIGRYTEVLKTHGLLV |
AHEVGWKYQ.VTATLE.KRK.KAKIHYRK.KQLMRL.KQAEKNVEKKI.RYTEVLKTHGLLV | |
Retrocopy | AHEVGWKYQLVTATLEGKRK-KAKIHYRKRKQLMRLQKQAEKNVEKKIDRYTEVLKTHGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |