RetrogeneDB ID: | retro_cjac_972 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 12:35064790..35065355(+) | ||
Located in intron of: | ENSCJAG00000013525 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000000072 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60. % |
Parental protein coverage: | 98.03 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MAEVQVLVLD-GRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG |
.AE...LVL..G.GHLL..LAA.VAKQVLLG.K.VV.R.EGINIS..FYRNKL.Y.AF...RMNTN.... | |
Retrocopy | VAEGHILVLE<G*GHLLRHLAADVAKQVLLGWKMVVPR-EGINIS-HFYRNKLTYPAFFHRRMNTNTAEN |
Parental | P-YHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPP-YDKKKR--MVVPAALKVVRLKPTRKF |
P.Y.F..P...F....R....HKT..GQAALD...VFDGIP.P..D.K.R.....PA.L....LKP.R.F | |
Retrocopy | P<YYFPVPTASFSGQCR-VAAHKTQ*GQAALDP-EVFDGIPLP<HDRKTRWGFLLPARLY---LKPMREF |
Parental | AYLGRL-AHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKINKYTEVLKTH |
AYLGRL.AHEV.WKYQAVTATLE.....KAK.HY.KKKQLM...K..EKN.EKK..K.TE.L.TH | |
Retrocopy | AYLGRL>AHEVDWKYQAVTATLE--KRKKAKTHYQKKKQLM---KKVEKNMEKKADKFTEALRTH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .07 RPM | 232 .26 RPM |
SRP051959_heart | 0 .05 RPM | 251 .83 RPM |
SRP051959_kidney | 0 .07 RPM | 225 .32 RPM |
SRP051959_liver | 0 .04 RPM | 286 .16 RPM |
SRP051959_lung | 0 .29 RPM | 328 .90 RPM |
SRP051959_lymph_node | 0 .71 RPM | 516 .94 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 345 .41 RPM |
SRP051959_spleen | 0 .59 RPM | 377 .88 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_671 |
Macaca mulatta | retro_mmul_2399 |