RetrogeneDB ID: | retro_cfam_976 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 20:8564213..8564558(-) | ||
Located in intron of: | ENSCAFG00000005459 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000029892 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L13a [Source:UniProtKB/TrEMBL;Acc:F1PI16] |
Percent Identity: | 65.22 % |
Parental protein coverage: | 56.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | HKTKRGQAALDRLKVFDGIPPPYDKKKRMVVP-AALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE |
H.T...QA....L....GI.PPYD.KK..VV..AALK.V.LKPT..FA..G.LAHEVGWKYQ.VTATLEE | |
Retrocopy | HATPQNQAKPGCLGPPQGILPPYDRKKQVVVVLAALKFVCLKPT*NFAFFGNLAHEVGWKYQIVTATLEE |
Parental | KRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGLLV |
KRKEKAKIHY.K.K.L..L.KQA.K..EKKI.KYTEVLK.H...V | |
Retrocopy | KRKEKAKIHYWKEKPLLGL*KQAGKILEKKINKYTEVLKPHKPMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 527 .21 RPM |
SRP017611_brain | 0 .00 RPM | 157 .67 RPM |
SRP017611_kidney | 0 .00 RPM | 1439 .15 RPM |
SRP017611_liver | 0 .00 RPM | 308 .91 RPM |