RetrogeneDB ID: | retro_cjac_1706 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 19:26877280..26877873(+) | ||
Located in intron of: | ENSCJAG00000017046 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000000072 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70. % |
Parental protein coverage: | 98.03 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR |
QVL.L.G.GHLLG.L.AIVAKQVLLGRK..V..CEGI.ISGNFYRNKLK.LAFL.K.MNT.PS.GP.H.R | |
Retrocopy | QVLALCGQGHLLGLLTAIVAKQVLLGRKAMVMHCEGIDISGNFYRNKLKCLAFLHKWMNTAPS*GPHHSR |
Parental | APSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHE |
A.S...W.T..GM.PHKTK.GQAALDRL.VFDGIP.P...KK.MVVPAAL....L.P.RKF..LG.L.HE | |
Retrocopy | AFSHLVWQTLWGMMPHKTK*GQAALDRLMVFDGIPLP-QQKKQMVVPAALTAEHLIPVRKFTCLGPLSHE |
Parental | VGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKI-NKYTEVLKTHGLLV |
.GW.Y.AVTATLEEKR.EKAK.H..KK.QL.R..K..EKN.EKKI..K.TEVLKTHG.LV | |
Retrocopy | IGWRYRAVTATLEEKRREKAKRHHQKKQQLTRPWKWTEKNMEKKI<HKSTEVLKTHGFLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .04 RPM | 232 .26 RPM |
SRP051959_heart | 0 .02 RPM | 251 .83 RPM |
SRP051959_kidney | 0 .07 RPM | 225 .32 RPM |
SRP051959_liver | 0 .04 RPM | 286 .16 RPM |
SRP051959_lung | 0 .11 RPM | 328 .90 RPM |
SRP051959_lymph_node | 0 .18 RPM | 516 .94 RPM |
SRP051959_skeletal_muscle | 0 .09 RPM | 345 .41 RPM |
SRP051959_spleen | 0 .13 RPM | 377 .88 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_293 |