RetrogeneDB ID: | retro_cfam_924 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:15742744..15743337(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000029892 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L13a [Source:UniProtKB/TrEMBL;Acc:F1PI16] |
Percent Identity: | 87.94 % |
Parental protein coverage: | 97.54 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VLVLDGRGHLLGRLAAIVAKQVL-LGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR |
VLVL.GRGHLLG.LAA.VAKQVL.LG.KVVVV..EGINISGNFYRNKLKYLAFL.K.MNTNPSRGPY.F. | |
Retrocopy | VLVLSGRGHLLGCLAATVAKQVL<LGCKVVVVHYEGINISGNFYRNKLKYLAFLCKQMNTNPSRGPYRFQ |
Parental | APSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHE |
APSRIFW.T.RGMLPHKTK.GQAALDRLKVFDGIPPPY..KK.MVVPAALKVVRLKPTRKFAYLGRLAH. | |
Retrocopy | APSRIFWWTARGMLPHKTK*GQAALDRLKVFDGIPPPY*NKKQMVVPAALKVVRLKPTRKFAYLGRLAHK |
Parental | VGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGLLV |
VGWKYQAVTATLEE.RKEKAKIHY.KKKQLMRL.KQA.KNVEKK.DKYTE.LKTHGLLV | |
Retrocopy | VGWKYQAVTATLEENRKEKAKIHYWKKKQLMRLWKQAKKNVEKKTDKYTEFLKTHGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 527 .21 RPM |
SRP017611_brain | 0 .00 RPM | 157 .67 RPM |
SRP017611_kidney | 0 .13 RPM | 1439 .15 RPM |
SRP017611_liver | 0 .07 RPM | 308 .91 RPM |