Parental gene:

H3F3A, ENSPCAG00000004484

Aliases:None
Description:H3 histone, family 3A [Source:HGNC Symbol;Acc:4764]
Organism:Hyrax (Procavia capensis)
Coordinates:GeneScaffold_6944:162350..162974(-)


>ENSPCAG00000004484
ATGGCCCGAACCAAGCAGACCGCGCGTAAATCCACCGGGGGGAAAGCCCCCCGCAAGCAGCTGGCCACTAAGGCAGCCAG
GAAGAGCGCTCCCTCTACCGGCGGGGTGAAGAAACCTCACCGTTACAGGCCCGGAACCGTGGCGCTGCGAGAGATTCGCC
GTTATCAGAAATCGACCGAGCTTCTGATTCGAAAGCTGCCTTTCCAGAGGTTGGTGAGGGAGATCGCTCAGGATTTCAAA
ACAGACTTGAGGTTTCAGAGTGCAGCTATTGGCGCTCTGCAGGAGGCTAGCGAAGCGTACCTGGTGGGGTTATTTGAAGA
CACTAATCTGTGTGCCATCCACGCCAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGGG
AGAGAGCTTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000024561 ortholog_one2one 3 retrogenes
retro_btau_156, retro_btau_204, retro_btau_47,
Canis familiaris ENSCAFG00000004916 possible_ortholog 2 retrogenes
retro_cfam_1117, retro_cfam_622,
Canis familiaris ENSCAFG00000016119 possible_ortholog 4 retrogenes
retro_cfam_168, retro_cfam_1845, retro_cfam_650, retro_cfam_673,
Erinaceus europaeus ENSEEUG00000013796 possible_ortholog 1 retrogene
retro_eeur_2,
Felis catus ENSFCAG00000003617 ortholog_one2one 4 retrogenes
retro_fcat_1085, retro_fcat_1953, retro_fcat_592, retro_fcat_830,
Felis catus ENSFCAG00000030424 possible_ortholog 5 retrogenes
retro_fcat_1251, retro_fcat_1532, retro_fcat_1533, retro_fcat_2011, retro_fcat_674,
Macaca mulatta ENSMMUG00000031483 possible_ortholog 9 retrogenes
retro_mmul_108, retro_mmul_147, retro_mmul_201, retro_mmul_213, retro_mmul_215, retro_mmul_286, retro_mmul_337, retro_mmul_346, retro_mmul_7,
Nomascus leucogenys ENSNLEG00000001577 possible_ortholog 2 retrogenes
retro_nleu_25, retro_nleu_35,
Otolemur garnettii ENSOGAG00000025933 possible_ortholog 14 retrogenes
retro_ogar_1285, retro_ogar_1364, retro_ogar_1449, retro_ogar_1575, retro_ogar_1576, retro_ogar_2200, retro_ogar_2316, retro_ogar_2449, retro_ogar_2634, retro_ogar_3235, retro_ogar_42, retro_ogar_733, retro_ogar_937, retro_ogar_952,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Pteropus vampyrus ENSPVAG00000008459 possible_ortholog 2 retrogenes
retro_pvam_218, retro_pvam_52,
Sarcophilus harrisii ENSSHAG00000005807 ortholog_one2one 1 retrogene
retro_shar_565,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pcap_95 68.07 86.03
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2. retro_pcap_171 97.06 100.00
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Download FASTA sequences of all ENSPCAG00000004484 retrocopies