RetrogeneDB ID: | retro_btau_156 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:30124767..30125178(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000045673 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3A | ||
Ensembl ID: | ENSBTAG00000024561 | ||
Aliases: | None | ||
Description: | Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:Q5E9F8] |
Percent Identity: | 94.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
MARTKQTARKST.GKAPRKQLATKAARKSAPSTG.VKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ. | |
Retrocopy | MARTKQTARKSTSGKAPRKQLATKAARKSAPSTGRVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQS |
Parental | LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
LVREIAQDFKTDLRFQSAAIGAL.EASEAYLVGLFEDTNLCAI.AKRVTIMPKDIQLA.R..GERA | |
Retrocopy | LVREIAQDFKTDLRFQSAAIGALLEASEAYLVGLFEDTNLCAICAKRVTIMPKDIQLACRKCGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .14 RPM | 115 .79 RPM |
ERP005899_muscle | 0 .11 RPM | 371 .37 RPM |
SRP017611_brain | 0 .00 RPM | 34 .21 RPM |
SRP017611_kidney | 0 .06 RPM | 113 .56 RPM |
SRP017611_liver | 0 .00 RPM | 33 .98 RPM |
SRP030211_testis | 0 .11 RPM | 92 .72 RPM |