RetrogeneDB ID: | retro_fcat_1251 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:18017924..18018294(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000030424 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 50.76 % |
Parental protein coverage: | 93.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | KSTGGKAPRKQLATK-AARKSAPSTGG-VKKPHRYRPGTVALREIRRYQKS-TELLIRKLPFQRLVR-EI |
K.TG.K........K.A..KSAPSTGG.V.KPH...PG..AL.E.R..QKS..EL.IRKLP.QRLV..EI | |
Retrocopy | KPTGPKSTGRKAPRK<ATGKSAPSTGG<VRKPHCSWPGAKALKETRSDQKS>PELPIRKLPCQRLVE<EI |
Parental | AQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV-TIMPKDIQLARRIRGERA |
AQD.KTD..FQ...IGA..EA........F..T..C......V.T..P.D.QL..R.R.ERA | |
Retrocopy | AQDLKTDPHFQT--IGAPPEARPSWWA--FWKTLTCVLSTSNVLTFVPEDVQLVCRGREERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 170 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 229 .61 RPM |
SRP017611_liver | 0 .00 RPM | 83 .70 RPM |