RetrogeneDB ID: | retro_cfam_622 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 14:18062521..18062926(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000004916 | ||
Aliases: | None | ||
Description: | Histone H3 [Source:UniProtKB/TrEMBL;Acc:E2R6K5] |
Percent Identity: | 86.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGG-VKKPHRYRPGTVALREIRRYQKSTELLIRKL-PF |
MARTKQT.RKSTGGKAPR.QLATKAAR.SAPSTGG.VK.PHR.RPGTVALRE.RR.Q.S.ELLIRKL.PF | |
Retrocopy | MARTKQTVRKSTGGKAPRTQLATKAARRSAPSTGG<VKTPHRCRPGTVALRETRRDQRSAELLIRKL<PF |
Parental | QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCA-IHAKRVTIMPKDIQLARRIRGERA |
QRLVR.IAQDF.TDLR.QSAA.GALQEASEA.LVGLFEDT..CA.IHAKRVTIMPKDIQLARRIRGERA | |
Retrocopy | QRLVRDIAQDFETDLRVQSAATGALQEASEACLVGLFEDTHPCA<IHAKRVTIMPKDIQLARRIRGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 286 .22 RPM |
SRP017611_brain | 0 .00 RPM | 57 .96 RPM |
SRP017611_kidney | 0 .07 RPM | 89 .48 RPM |
SRP017611_liver | 0 .00 RPM | 20 .23 RPM |