Parental gene:

ENSCAFG00000004916

Aliases:None
Description:Histone H3 [Source:UniProtKB/TrEMBL;Acc:E2R6K5]
Organism:Dog (Canis familiaris)
Coordinates:9:4806259..4806901(+)


>ENSCAFG00000004916
ATGGCCCGAACCAAGCAGACTGCCCGTAAATCCACGGGTGGGAAAGCGCCCCGCAAACAGCTGGCCACTAAAGCCGCCCG
GAAAAGCGCCCCTTCTACTGGCGGGGTGAAAAAACCTCATCGCTACAGGCCTGGGACCGTAGCCCTTCGGGAGATCCGCC
GTTACCAGAAGTCCACCGAGCTTCTGATCCGGAAGCTGCCTTTCCAGAGGTTGGTGAGGGAGATCGCCCAGGATTTCAAA
ACCGATCTGAGGTTTCAGAGCGCCGCCATTGGCGCGCTTCAGGAGGCCAGTGAAGCGTACCTGGTGGGTTTATTTGAAGA
TACTAATCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGAG
AGAGAGCTTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 286 .22 RPM
SRP017611_brain 57 .96 RPM
SRP017611_kidney 89 .48 RPM
SRP017611_liver 20 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014588 possible_ortholog 7 retrogenes
retro_amel_1023, retro_amel_1026, retro_amel_144, retro_amel_570, retro_amel_687, retro_amel_711, retro_amel_903,
Bos taurus ENSBTAG00000024561 possible_ortholog 3 retrogenes
retro_btau_156, retro_btau_204, retro_btau_47,
Canis familiaris ENSCAFG00000016119 within_species_paralog 4 retrogenes
retro_cfam_168, retro_cfam_1845, retro_cfam_650, retro_cfam_673,
Dipodomys ordii ENSDORG00000008132 possible_ortholog 9 retrogenes
retro_dord_238, retro_dord_283, retro_dord_43, retro_dord_589, retro_dord_678, retro_dord_685, retro_dord_719, retro_dord_765, retro_dord_774,
Erinaceus europaeus ENSEEUG00000013796 ortholog_many2many 1 retrogene
retro_eeur_2,
Felis catus ENSFCAG00000003617 possible_ortholog 4 retrogenes
retro_fcat_1085, retro_fcat_1953, retro_fcat_592, retro_fcat_830,
Felis catus ENSFCAG00000030424 possible_ortholog 5 retrogenes
retro_fcat_1251, retro_fcat_1532, retro_fcat_1533, retro_fcat_2011, retro_fcat_674,
Homo sapiens ENSG00000163041 possible_ortholog 5 retrogenes
retro_hsap_2825, retro_hsap_2889, retro_hsap_3102, retro_hsap_3214, retro_hsap_4800,
Gorilla gorilla ENSGGOG00000022526 possible_ortholog 11 retrogenes
retro_ggor_1179, retro_ggor_1809, retro_ggor_1837, retro_ggor_1919, retro_ggor_2003, retro_ggor_2837, retro_ggor_2956, retro_ggor_3082, retro_ggor_393, retro_ggor_736, retro_ggor_944,
Gadus morhua ENSGMOG00000014306 possible_ortholog 1 retrogene
retro_gmor_9,
Macropus eugenii ENSMEUG00000004090 ortholog_one2many 5 retrogenes
retro_meug_1041, retro_meug_1065, retro_meug_1819, retro_meug_281, retro_meug_573,
Microcebus murinus ENSMICG00000010469 possible_ortholog 6 retrogenes
retro_mmur_1185, retro_mmur_1243, retro_mmur_1249, retro_mmur_1543, retro_mmur_827, retro_mmur_83,
Macaca mulatta ENSMMUG00000031483 ortholog_one2many 9 retrogenes
retro_mmul_108, retro_mmul_147, retro_mmul_201, retro_mmul_213, retro_mmul_215, retro_mmul_286, retro_mmul_337, retro_mmul_346, retro_mmul_7,
Monodelphis domestica ENSMODG00000005983 possible_ortholog 3 retrogenes
retro_mdom_1037, retro_mdom_1132, retro_mdom_175,
Mustela putorius furo ENSMPUG00000013811 possible_ortholog 3 retrogenes
retro_mputfur_1159, retro_mputfur_787, retro_mputfur_881,
Mus musculus ENSMUSG00000016559 possible_ortholog 18 retrogenes
retro_mmus_1058, retro_mmus_1188, retro_mmus_1269, retro_mmus_1535, retro_mmus_1635, retro_mmus_2021, retro_mmus_2083, retro_mmus_2377, retro_mmus_2771, retro_mmus_2867, retro_mmus_2972, retro_mmus_3002, retro_mmus_3144, retro_mmus_3477, retro_mmus_3667, retro_mmus_896, retro_mmus_961, retro_mmus_962,
Nomascus leucogenys ENSNLEG00000001577 possible_ortholog 2 retrogenes
retro_nleu_25, retro_nleu_35,
Otolemur garnettii ENSOGAG00000024312 possible_ortholog 11 retrogenes
retro_ogar_1086, retro_ogar_1790, retro_ogar_1863, retro_ogar_2364, retro_ogar_2463, retro_ogar_2581, retro_ogar_2746, retro_ogar_3415, retro_ogar_478, retro_ogar_842, retro_ogar_955,
Otolemur garnettii ENSOGAG00000025933 possible_ortholog 14 retrogenes
retro_ogar_1285, retro_ogar_1364, retro_ogar_1449, retro_ogar_1575, retro_ogar_1576, retro_ogar_2200, retro_ogar_2316, retro_ogar_2449, retro_ogar_2634, retro_ogar_3235, retro_ogar_42, retro_ogar_733, retro_ogar_937, retro_ogar_952,
Oreochromis niloticus ENSONIG00000015805 ortholog_one2many 7 retrogenes
retro_onil_45, retro_onil_47, retro_onil_51, retro_onil_54, retro_onil_61, retro_onil_65, retro_onil_69,
Procavia capensis ENSPCAG00000004484 possible_ortholog 2 retrogenes
retro_pcap_171, retro_pcap_95,
Pongo abelii ENSPPYG00000000168 possible_ortholog 14 retrogenes
retro_pabe_1285, retro_pabe_2151, retro_pabe_2204, retro_pabe_2252, retro_pabe_2391, retro_pabe_2679, retro_pabe_2722, retro_pabe_2805, retro_pabe_2938, retro_pabe_3078, retro_pabe_323, retro_pabe_3420, retro_pabe_3637, retro_pabe_3697,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Pan troglodytes ENSPTRG00000002045 possible_ortholog 20 retrogenes
retro_ptro_1045, retro_ptro_1704, retro_ptro_1770, retro_ptro_1867, retro_ptro_1954, retro_ptro_2098, retro_ptro_2183, retro_ptro_2228, retro_ptro_2229, retro_ptro_2230, retro_ptro_2232, retro_ptro_2233, retro_ptro_2363, retro_ptro_279, retro_ptro_2834, retro_ptro_2936, retro_ptro_2978, retro_ptro_300, retro_ptro_3111, retro_ptro_3164,
Pteropus vampyrus ENSPVAG00000008459 possible_ortholog 2 retrogenes
retro_pvam_218, retro_pvam_52,
Rattus norvegicus ENSRNOG00000003220 possible_ortholog 4 retrogenes
retro_rnor_121, retro_rnor_191, retro_rnor_336, retro_rnor_44,
Sarcophilus harrisii ENSSHAG00000005807 possible_ortholog 1 retrogene
retro_shar_565,
Sus scrofa ENSSSCG00000023971 ortholog_one2many 2 retrogenes
retro_sscr_31, retro_sscr_712,
Tursiops truncatus ENSTTRG00000015889 possible_ortholog 7 retrogenes
retro_ttru_1094, retro_ttru_1306, retro_ttru_18, retro_ttru_451, retro_ttru_738, retro_ttru_814, retro_ttru_92,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_622 86.33 100.00
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2. retro_cfam_1117 61.15 100.00
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Download FASTA sequences of all ENSCAFG00000004916 retrocopies