RetrogeneDB ID: | retro_cfam_650 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 15:10195788..10196176(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000016119 | ||
Aliases: | None | ||
Description: | Histone H3 [Source:UniProtKB/TrEMBL;Acc:E2R6K5] |
Percent Identity: | 68.18 % |
Parental protein coverage: | 94.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAP-STGGVKKPHRY--RPGTVALREIRR-YQKSTELLIRKL |
MA.TKQ.A.KST...A.RK.L.TKA..K..P.STGGVKKP.....RPGTVALRE....Y.KS.ELLI.KL | |
Retrocopy | MAPTKQNACKSTSATAQRKKLVTKAVAKGCP<STGGVKKPTSQ**RPGTVALREVDV<YLKSSELLIGKL |
Parental | PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA |
PF..LV.E.AQDFKT.L.FQ..A.GALQEASE..LVGLFED.N..AIHAK.VTI.PKDIQLA | |
Retrocopy | PFRWLVGELAQDFKTNLCFQTTAFGALQEASETHLVGLFEDINMSAIHAKHVTIIPKDIQLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 244 .68 RPM |
SRP017611_brain | 0 .08 RPM | 31 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 173 .68 RPM |
SRP017611_liver | 0 .00 RPM | 42 .35 RPM |