RetrogeneDB ID: | retro_fcat_2011 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:96855133..96855451(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000001402 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000030424 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.25 % |
Parental protein coverage: | 77.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ |
PRKQ.ATKAARK.APST.GV.KP.R.RPGTVA.REI..YQKS.EL.IRKLPFQR.VREIAQD..TDLRF. | |
Retrocopy | PRKQPATKAARKNAPSTAGVEKPRRHRPGTVAFREITGYQKSAELPIRKLPFQRPVREIAQDLETDLRFW |
Parental | SAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMP |
SAA.GAL.EASEAYLVGL.EDT.L.A..AKRVTIMP | |
Retrocopy | SAAGGALREASEAYLVGLLEDTSLPAVRAKRVTIMP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .80 RPM | 170 .44 RPM |
SRP017611_kidney | 0 .82 RPM | 229 .61 RPM |
SRP017611_liver | 0 .40 RPM | 83 .70 RPM |