RetrogeneDB ID: | retro_cfam_168 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:19127770..19128181(+) | ||
Located in intron of: | ENSCAFG00000000133 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000011517 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000016119 | ||
Aliases: | None | ||
Description: | Histone H3 [Source:UniProtKB/TrEMBL;Acc:E2R6K5] |
Percent Identity: | 94.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
MARTKQTA.KSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVAL.EIR.YQKSTELLIRK.PFQR | |
Retrocopy | MARTKQTAHKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALHEIRHYQKSTELLIRKFPFQR |
Parental | LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
LVREIAQDFKTDLRFQSAA.GALQEASEAYLVGLFEDTNLCAIH.KRVTIMPKDIQLAR.IRGERA | |
Retrocopy | LVREIAQDFKTDLRFQSAATGALQEASEAYLVGLFEDTNLCAIHVKRVTIMPKDIQLARHIRGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .46 RPM | 244 .68 RPM |
SRP017611_brain | 0 .08 RPM | 31 .36 RPM |
SRP017611_kidney | 0 .40 RPM | 173 .68 RPM |
SRP017611_liver | 0 .07 RPM | 42 .35 RPM |