RetrogeneDB ID: | retro_fcat_1085 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:39596590..39596948(+) | ||
Located in intron of: | ENSFCAG00000011327 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000003617 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.92 % |
Parental protein coverage: | 86.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | APRKQLATKA-ARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI-RKLPFQRLVREIAQD-FKTD |
AP.KQ.A.K....K........K......P.T........Y...T..L......FQRLV.EIAQD..K.. | |
Retrocopy | APKKQTASKSNTSKAQRKQPDTKAADKSAPPTGRVKKPHCYRPGTVALFDSQTSFQRLVQEIAQD<YKNI |
Parental | LRFQSAAIGALQEASEAYLVGLFED-TNLCAIHAKRVTIMPKDIQLARRIRG |
L.FQSAAIGALQEASEAYLVGLFE..T..CAIHAKRVT.MPKDIQLA..I.G | |
Retrocopy | LCFQSAAIGALQEASEAYLVGLFEE<TSVCAIHAKRVTFMPKDIQLACHIHG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 35 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 120 .58 RPM |
SRP017611_liver | 0 .00 RPM | 49 .43 RPM |