RetrogeneDB ID: | retro_mmul_7 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:152287989..152288400(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000029404 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4361 | ||
Ensembl ID: | ENSMMUG00000031483 | ||
Aliases: | None | ||
Description: | Histone H3 [Source:UniProtKB/TrEMBL;Acc:F6QR30] |
Percent Identity: | 97.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
MA.TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ. | |
Retrocopy | MAPTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQH |
Parental | LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDT.LCAIHAKRVTIMPKDIQLARRIRGERA | |
Retrocopy | LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTHLCAIHAKRVTIMPKDIQLARRIRGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .11 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 24 .67 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .10 RPM |
SRP007412_heart | 0 .00 RPM | 0 .94 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .70 RPM |
SRP007412_liver | 0 .00 RPM | 0 .44 RPM |
SRP007412_testis | 0 .11 RPM | 2 .68 RPM |