RetrogeneDB ID: | retro_fcat_1953 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:118285633..118285965(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000003617 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.64 % |
Parental protein coverage: | 81.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
.A.TKQTA..STGGKAPRKQLA.K.A.KSAPSTGGV.K.HR.RPGTVAL...RRYQKS.EL.I..LP.QR | |
Retrocopy | VAPTKQTAHRSTGGKAPRKQLASKVAGKSAPSTGGVWKTHRHRPGTVALHRTRRYQKSAELPIHELPVQR |
Parental | LVREIAQDFKTDLRFQSAAIGA-LQEASEAYLVGLFEDTNLC |
LV.EIAQDFKTDL.FQS.A..A.L.EASEA..VG.......C | |
Retrocopy | LV*EIAQDFKTDLSFQSVASDA<LAEASEADRVGVGRGQRAC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 35 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 120 .58 RPM |
SRP017611_liver | 0 .00 RPM | 49 .43 RPM |