RetrogeneDB ID: | retro_fcat_1532 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:10714755..10715121(-) | ||
Located in intron of: | ENSFCAG00000015426 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000030424 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.46 % |
Parental protein coverage: | 88.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | ARTKQTARK-STGGKAPRKQLATKAARKSAPSTGG-VKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ |
A.TKQTARK...GG.A.RK...TKAA.KSAPSTGG..KKPH..RPG.VAL.EIRRYQKS.ELLIRKLPF. | |
Retrocopy | AHTKQTARKWAGGGEASRKPQVTKAACKSAPSTGG<MKKPHCHRPGPVALGEIRRYQKSIELLIRKLPFR |
Parental | RLVREIAQDFKTDLRFQSAAIG-ALQEA-SEAYLVGLFEDT--NLCAIHAKRVTIM |
.L.REIAQ.FKTDLRF.SAAI...LQEA.SEAY...LFED.....C.I.AK..... | |
Retrocopy | HLAREIAQAFKTDLRFRSAAIR<TLQEA<SEAYPADLFEDAPCQTCNIVAKDIQLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 170 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 229 .61 RPM |
SRP017611_liver | 0 .00 RPM | 83 .70 RPM |