RetrogeneDB ID:

retro_mmul_215

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:194327058..194327469(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMMUG00000031261
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:MMU.4361
Ensembl ID:ENSMMUG00000031483
Aliases:None
Description:Histone H3 [Source:UniProtKB/TrEMBL;Acc:F6QR30]


Retrocopy-Parental alignment summary:






>retro_mmul_215
ATGGCTGGTACAAAGCAGACTGCCCGCAAATCGACCAGTGGTAAGGCACCCAGGAAGCAACTGTCTACAAAAGCCACTTG
CAAGAGTGAGCCTTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCCCTCGGTGAAATTAGCC
GTTATCAGAAGTCCACTGAATTTCTGATTCCCAAAATTCCCCTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAA
ACAGATCTGCGCTTTCAGAGCGCAGCTATGGGTGCTTTGCAGGAGGCGAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA
CACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAG
AACGTGCTTAA

ORF - retro_mmul_215 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.44 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR
MA.TKQTARKST.GKAPRKQL.TKA..KS.PSTGGVKKPHRYRPGTVAL.EI.RYQKSTE.LI.K.P.QR
RetrocopyMAGTKQTARKSTSGKAPRKQLSTKATCKSEPSTGGVKKPHRYRPGTVALGEISRYQKSTEFLIPKIPLQR
ParentalLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
LVREIAQDFKTDLRFQSAA.GALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
RetrocopyLVREIAQDFKTDLRFQSAAMGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 0 .11 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 24 .67 RPM
SRP007412_cerebellum 0 .00 RPM 1 .10 RPM
SRP007412_heart 0 .06 RPM 0 .94 RPM
SRP007412_kidney 0 .00 RPM 0 .70 RPM
SRP007412_liver 0 .04 RPM 0 .44 RPM
SRP007412_testis 0 .00 RPM 2 .68 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_215 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_215 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_215 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 30 parental genes, and 183 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000145887 retrocopies
Bos taurus ENSBTAG000000245613 retrocopies
Canis familiaris ENSCAFG000000049162 retrocopies
Canis familiaris ENSCAFG000000161194 retrocopies
Dipodomys ordii ENSDORG000000081329 retrocopies
Erinaceus europaeus ENSEEUG000000137961 retrocopy
Felis catus ENSFCAG000000036174 retrocopies
Felis catus ENSFCAG000000304245 retrocopies
Homo sapiens ENSG000001630415 retrocopies
Gorilla gorilla ENSGGOG0000002252611 retrocopies
Gadus morhua ENSGMOG000000143061 retrocopy
Macropus eugenii ENSMEUG000000040905 retrocopies
Microcebus murinus ENSMICG000000104696 retrocopies
Macaca mulatta ENSMMUG00000031483 9 retrocopies
Monodelphis domestica ENSMODG000000059833 retrocopies
Mustela putorius furoENSMPUG000000138113 retrocopies
Mus musculus ENSMUSG0000001655918 retrocopies
Nomascus leucogenys ENSNLEG000000015772 retrocopies
Otolemur garnettii ENSOGAG0000002431211 retrocopies
Otolemur garnettii ENSOGAG0000002593314 retrocopies
Oreochromis niloticus ENSONIG000000158057 retrocopies
Procavia capensis ENSPCAG000000044842 retrocopies
Pongo abelii ENSPPYG0000000016814 retrocopies
Pongo abelii ENSPPYG000000086361 retrocopy
Pan troglodytes ENSPTRG0000000204520 retrocopies
Pteropus vampyrus ENSPVAG000000084592 retrocopies
Rattus norvegicus ENSRNOG000000032204 retrocopies
Sarcophilus harrisii ENSSHAG000000058071 retrocopy
Sus scrofa ENSSSCG000000239712 retrocopies
Tursiops truncatus ENSTTRG000000158897 retrocopies



Copyright © RetrogeneDB 2014-2017