RetrogeneDB - Parental gene ENSMMUG00000031483 details

							
>ENSMMUG00000031483
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCG

CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCACTCCGTGAAATTAGAC

GTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAA

ACAGATCTGCGCTTCCAGAGCGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA

CACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAG

AACGTGCTTAA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	24 .67 RPM
SRP007412_brain	0 .11 RPM
SRP007412_cerebellum	1 .10 RPM
SRP007412_heart	0 .94 RPM
SRP007412_kidney	0 .70 RPM
SRP007412_liver	0 .44 RPM
SRP007412_testis	2 .68 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000014588	possible_ortholog	7 retrogenes	retro_amel_1023, retro_amel_1026, retro_amel_144, retro_amel_570, retro_amel_687, retro_amel_711, retro_amel_903,
Bos taurus	ENSBTAG00000024561	possible_ortholog	3 retrogenes	retro_btau_156, retro_btau_204, retro_btau_47,
Canis familiaris	ENSCAFG00000004916	ortholog_one2many	2 retrogenes	retro_cfam_1117, retro_cfam_622,
Canis familiaris	ENSCAFG00000016119	ortholog_one2many	4 retrogenes	retro_cfam_168, retro_cfam_1845, retro_cfam_650, retro_cfam_673,
Dipodomys ordii	ENSDORG00000008132	possible_ortholog	9 retrogenes	retro_dord_238, retro_dord_283, retro_dord_43, retro_dord_589, retro_dord_678, retro_dord_685, retro_dord_719, retro_dord_765, retro_dord_774,
Erinaceus europaeus	ENSEEUG00000013796	ortholog_one2many	1 retrogene	retro_eeur_2,
Felis catus	ENSFCAG00000003617	possible_ortholog	4 retrogenes	retro_fcat_1085, retro_fcat_1953, retro_fcat_592, retro_fcat_830,
Felis catus	ENSFCAG00000030424	possible_ortholog	5 retrogenes	retro_fcat_1251, retro_fcat_1532, retro_fcat_1533, retro_fcat_2011, retro_fcat_674,
Homo sapiens	ENSG00000163041	possible_ortholog	5 retrogenes	retro_hsap_2825, retro_hsap_2889, retro_hsap_3102, retro_hsap_3214, retro_hsap_4800,
Gorilla gorilla	ENSGGOG00000022526	possible_ortholog	11 retrogenes	retro_ggor_1179, retro_ggor_1809, retro_ggor_1837, retro_ggor_1919, retro_ggor_2003, retro_ggor_2837, retro_ggor_2956, retro_ggor_3082, retro_ggor_393, retro_ggor_736, retro_ggor_944,
Gadus morhua	ENSGMOG00000014306	possible_ortholog	1 retrogene	retro_gmor_9,
Macropus eugenii	ENSMEUG00000004090	ortholog_one2one	5 retrogenes	retro_meug_1041, retro_meug_1065, retro_meug_1819, retro_meug_281, retro_meug_573,
Microcebus murinus	ENSMICG00000010469	possible_ortholog	6 retrogenes	retro_mmur_1185, retro_mmur_1243, retro_mmur_1249, retro_mmur_1543, retro_mmur_827, retro_mmur_83,
Monodelphis domestica	ENSMODG00000005983	possible_ortholog	3 retrogenes	retro_mdom_1037, retro_mdom_1132, retro_mdom_175,
Mustela putorius furo	ENSMPUG00000013811	possible_ortholog	3 retrogenes	retro_mputfur_1159, retro_mputfur_787, retro_mputfur_881,
Mus musculus	ENSMUSG00000016559	possible_ortholog	18 retrogenes	retro_mmus_1058, retro_mmus_1188, retro_mmus_1269, retro_mmus_1535, retro_mmus_1635, retro_mmus_2021, retro_mmus_2083, retro_mmus_2377, retro_mmus_2771, retro_mmus_2867, retro_mmus_2972, retro_mmus_3002, retro_mmus_3144, retro_mmus_3477, retro_mmus_3667, retro_mmus_896, retro_mmus_961, retro_mmus_962,
Nomascus leucogenys	ENSNLEG00000001577	possible_ortholog	2 retrogenes	retro_nleu_25, retro_nleu_35,
Otolemur garnettii	ENSOGAG00000024312	possible_ortholog	11 retrogenes	retro_ogar_1086, retro_ogar_1790, retro_ogar_1863, retro_ogar_2364, retro_ogar_2463, retro_ogar_2581, retro_ogar_2746, retro_ogar_3415, retro_ogar_478, retro_ogar_842, retro_ogar_955,
Otolemur garnettii	ENSOGAG00000025933	possible_ortholog	14 retrogenes	retro_ogar_1285, retro_ogar_1364, retro_ogar_1449, retro_ogar_1575, retro_ogar_1576, retro_ogar_2200, retro_ogar_2316, retro_ogar_2449, retro_ogar_2634, retro_ogar_3235, retro_ogar_42, retro_ogar_733, retro_ogar_937, retro_ogar_952,
Oreochromis niloticus	ENSONIG00000015805	ortholog_one2one	7 retrogenes	retro_onil_45, retro_onil_47, retro_onil_51, retro_onil_54, retro_onil_61, retro_onil_65, retro_onil_69,
Procavia capensis	ENSPCAG00000004484	possible_ortholog	2 retrogenes	retro_pcap_171, retro_pcap_95,
Pongo abelii	ENSPPYG00000000168	possible_ortholog	14 retrogenes	retro_pabe_1285, retro_pabe_2151, retro_pabe_2204, retro_pabe_2252, retro_pabe_2391, retro_pabe_2679, retro_pabe_2722, retro_pabe_2805, retro_pabe_2938, retro_pabe_3078, retro_pabe_323, retro_pabe_3420, retro_pabe_3637, retro_pabe_3697,
Pongo abelii	ENSPPYG00000008636	possible_ortholog	1 retrogene	retro_pabe_2662,
Pan troglodytes	ENSPTRG00000002045	possible_ortholog	20 retrogenes	retro_ptro_1045, retro_ptro_1704, retro_ptro_1770, retro_ptro_1867, retro_ptro_1954, retro_ptro_2098, retro_ptro_2183, retro_ptro_2228, retro_ptro_2229, retro_ptro_2230, retro_ptro_2232, retro_ptro_2233, retro_ptro_2363, retro_ptro_279, retro_ptro_2834, retro_ptro_2936, retro_ptro_2978, retro_ptro_300, retro_ptro_3111, retro_ptro_3164,
Pteropus vampyrus	ENSPVAG00000008459	possible_ortholog	2 retrogenes	retro_pvam_218, retro_pvam_52,
Rattus norvegicus	ENSRNOG00000003220	possible_ortholog	4 retrogenes	retro_rnor_121, retro_rnor_191, retro_rnor_336, retro_rnor_44,
Sarcophilus harrisii	ENSSHAG00000005807	possible_ortholog	1 retrogene	retro_shar_565,
Sus scrofa	ENSSSCG00000023971	ortholog_one2one	2 retrogenes	retro_sscr_31, retro_sscr_712,
Tursiops truncatus	ENSTTRG00000015889	possible_ortholog	7 retrogenes	retro_ttru_1094, retro_ttru_1306, retro_ttru_18, retro_ttru_451, retro_ttru_738, retro_ttru_814, retro_ttru_92,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_mmul_7	97.79	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_mmul_108	99.26	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_mmul_147	94.07	99.26	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_mmul_201	100.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_mmul_213	100.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_mmul_215	90.44	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_mmul_286	97.06	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_mmul_337	97.06	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_mmul_346	97.79	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSMMUG00000031483 retrocopies

Parental gene:	MMU.4361, ENSMMUG00000031483
Aliases:	None
Description:	Histone H3 [Source:UniProtKB/TrEMBL;Acc:F6QR30]
Organism:	*Rhesus macaque (Macaca mulatta)*
Coordinates:	1:144327504..144337196(-)

Parental gene:

MMU.4361, ENSMMUG00000031483