RetrogeneDB ID: | retro_cpor_1431 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_81:2255601..2255903(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPE1 | ||
Ensembl ID: | ENSCPOG00000027474 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.33 % |
Parental protein coverage: | 99.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AGQAFRKFLPLFDRVLVER-SAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDK |
AGQAFRKFL.LFDR.LVER.S.AETVTKGGIMLPEKSQGKVLQA.VVA.G.GS.GKGGE.Q.VSV.VG.. | |
Retrocopy | AGQAFRKFLLLFDRILVER<STAETVTKGGIMLPEKSQGKVLQAAVVALGAGSTGKGGEVQTVSVRVGGE |
Parental | VLLPEYGGTKVVLDDKDYFLFRDGDILGKYVE |
VLLPEYGG.KVVL.DKD.FLFRDGDIL.KYVE | |
Retrocopy | VLLPEYGGAKVVLGDKDCFLFRDGDIL*KYVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 30 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 149 .60 RPM |
SRP017611_liver | 0 .00 RPM | 94 .84 RPM |
SRP040447_lung | 0 .00 RPM | 27 .26 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 44 .11 RPM |