Parental gene:

HSPE1, ENSCPOG00000027474

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_104:3176645..3177823(-)


>ENSCPOG00000027474
CAGGCAGGCCAGGCATTTCGGAAGTTTCTCCCGCTGTTTGACCGAGTATTGGTTGAAAGAAGCGCAGCTGAAACTGTCAC
CAAAGGTGGCATTATGCTTCCAGAAAAATCTCAAGGCAAAGTACTGCAGGCAACTGTGGTAGCCGTGGGATCGGGCTCAA
AGGGAAAGGGTGGGGAGATCCAACCAGTTAGTGTGAAAGTTGGAGATAAGGTTCTTCTTCCAGAATATGGAGGCACCAAA
GTAGTTCTAGATGACAAGGATTATTTCTTATTTAGAGACGGCGACATTCTTGGAAAATACGTAGAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 30 .02 RPM
SRP017611_kidney 149 .60 RPM
SRP017611_liver 94 .84 RPM
SRP040447_lung 27 .26 RPM
SRP040447_skeletal_muscle 44 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013769 ortholog_one2one 18 retrogenes
retro_amel_1027, retro_amel_1083, retro_amel_1084, retro_amel_1100, retro_amel_133, retro_amel_1504, retro_amel_1513, retro_amel_1623, retro_amel_1699, retro_amel_1819, retro_amel_199, retro_amel_23, retro_amel_269, retro_amel_310, retro_amel_329, retro_amel_491, retro_amel_506, retro_amel_922,
Bos taurus ENSBTAG00000012589 ortholog_one2one 4 retrogenes
retro_btau_1118, retro_btau_624, retro_btau_760, retro_btau_801,
Dasypus novemcinctus ENSDNOG00000013246 ortholog_one2one 27 retrogenes
retro_dnov_1088, retro_dnov_1117, retro_dnov_1214, retro_dnov_1375, retro_dnov_1391, retro_dnov_1405, retro_dnov_1412, retro_dnov_1428, retro_dnov_1445, retro_dnov_1546, retro_dnov_1647, retro_dnov_1652, retro_dnov_1686, retro_dnov_1821, retro_dnov_2176, retro_dnov_2291, retro_dnov_2413, retro_dnov_2569, retro_dnov_2625, retro_dnov_2652, retro_dnov_418, retro_dnov_481, retro_dnov_483, retro_dnov_490, retro_dnov_524, retro_dnov_554, retro_dnov_966,
Dipodomys ordii ENSDORG00000011071 ortholog_one2one 19 retrogenes
retro_dord_153, retro_dord_158, retro_dord_162, retro_dord_191, retro_dord_207, retro_dord_216, retro_dord_219, retro_dord_296, retro_dord_368, retro_dord_403, retro_dord_417, retro_dord_462, retro_dord_492, retro_dord_525, retro_dord_535, retro_dord_583, retro_dord_740, retro_dord_744, retro_dord_755,
Loxodonta africana ENSLAFG00000000057 ortholog_one2one 1 retrogene
retro_lafr_69,
Otolemur garnettii ENSOGAG00000034434 possible_ortholog 24 retrogenes
retro_ogar_1018, retro_ogar_1441, retro_ogar_1512, retro_ogar_1690, retro_ogar_1744, retro_ogar_1899, retro_ogar_191, retro_ogar_1921, retro_ogar_200, retro_ogar_2030, retro_ogar_2129, retro_ogar_2310, retro_ogar_235, retro_ogar_2439, retro_ogar_2636, retro_ogar_2928, retro_ogar_3088, retro_ogar_3350, retro_ogar_3419, retro_ogar_389, retro_ogar_777, retro_ogar_824, retro_ogar_829, retro_ogar_834,
Rattus norvegicus ENSRNOG00000014868 possible_ortholog 6 retrogenes
retro_rnor_1094, retro_rnor_1320, retro_rnor_1334, retro_rnor_2245, retro_rnor_2296, retro_rnor_984,
Vicugna pacos ENSVPAG00000005805 ortholog_one2one 8 retrogenes
retro_vpac_173, retro_vpac_209, retro_vpac_292, retro_vpac_299, retro_vpac_329, retro_vpac_410, retro_vpac_443, retro_vpac_46,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_273 55.88 64.71
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cpor_649 69.81 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cpor_1431 83.33 99.02
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000027474 retrocopies