Parental gene:

HSPE1, ENSVPAG00000005805

Aliases:None
Description:heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269]
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_969:106332..108226(+)


>ENSVPAG00000005805
ATGGCAGGACAGGCATTTAGAAAGTTTCTCCCCCTCTTTGACCGCGTATTAGTTGAAAGGAGTGCAGCCGAAACTGTAAC
CAAAGGAGGCATTATGCTTCCAGAAAAATCTCAGGGGAAAGTATTGCAGGCAACAGTAGTAGCTGTTGGATCGGGCTCTA
AAGGAAAGGGTGGAGAGATTCAACCAGTTAGTGTGAAAGTTGGAGATAAAGTACTTCTCCCAGAATATGGAGGCACCAAA
GTAGTTCTAGATGACAAGGATTATTTCTTATTTAGAGATGGTGACATTCTTGGAAAATATGTAGATTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013769 ortholog_one2many 18 retrogenes
retro_amel_1027, retro_amel_1083, retro_amel_1084, retro_amel_1100, retro_amel_133, retro_amel_1504, retro_amel_1513, retro_amel_1623, retro_amel_1699, retro_amel_1819, retro_amel_199, retro_amel_23, retro_amel_269, retro_amel_310, retro_amel_329, retro_amel_491, retro_amel_506, retro_amel_922,
Bos taurus ENSBTAG00000012589 ortholog_one2one 4 retrogenes
retro_btau_1118, retro_btau_624, retro_btau_760, retro_btau_801,
Canis familiaris ENSCAFG00000010890 ortholog_one2one 4 retrogenes
retro_cfam_1768, retro_cfam_1883, retro_cfam_208, retro_cfam_556,
Cavia porcellus ENSCPOG00000027474 ortholog_one2one 3 retrogenes
retro_cpor_1431, retro_cpor_273, retro_cpor_649,
Dasypus novemcinctus ENSDNOG00000013246 ortholog_one2one 27 retrogenes
retro_dnov_1088, retro_dnov_1117, retro_dnov_1214, retro_dnov_1375, retro_dnov_1391, retro_dnov_1405, retro_dnov_1412, retro_dnov_1428, retro_dnov_1445, retro_dnov_1546, retro_dnov_1647, retro_dnov_1652, retro_dnov_1686, retro_dnov_1821, retro_dnov_2176, retro_dnov_2291, retro_dnov_2413, retro_dnov_2569, retro_dnov_2625, retro_dnov_2652, retro_dnov_418, retro_dnov_481, retro_dnov_483, retro_dnov_490, retro_dnov_524, retro_dnov_554, retro_dnov_966,
Dipodomys ordii ENSDORG00000011071 ortholog_one2one 19 retrogenes
retro_dord_153, retro_dord_158, retro_dord_162, retro_dord_191, retro_dord_207, retro_dord_216, retro_dord_219, retro_dord_296, retro_dord_368, retro_dord_403, retro_dord_417, retro_dord_462, retro_dord_492, retro_dord_525, retro_dord_535, retro_dord_583, retro_dord_740, retro_dord_744, retro_dord_755,
Equus caballus ENSECAG00000026874 ortholog_one2one 1 retrogene
retro_ecab_716,
Felis catus ENSFCAG00000014455 ortholog_one2one 9 retrogenes
retro_fcat_114, retro_fcat_1174, retro_fcat_1406, retro_fcat_1686, retro_fcat_1723, retro_fcat_457, retro_fcat_681, retro_fcat_794, retro_fcat_97,
Loxodonta africana ENSLAFG00000000057 ortholog_one2one 1 retrogene
retro_lafr_69,
Myotis lucifugus ENSMLUG00000000878 ortholog_one2one 4 retrogenes
retro_mluc_1724, retro_mluc_1972, retro_mluc_1979, retro_mluc_2086,
Oryctolagus cuniculus ENSOCUG00000010360 ortholog_one2one 1 retrogene
retro_ocun_127,
Otolemur garnettii ENSOGAG00000034434 ortholog_one2many 24 retrogenes
retro_ogar_1018, retro_ogar_1441, retro_ogar_1512, retro_ogar_1690, retro_ogar_1744, retro_ogar_1899, retro_ogar_191, retro_ogar_1921, retro_ogar_200, retro_ogar_2030, retro_ogar_2129, retro_ogar_2310, retro_ogar_235, retro_ogar_2439, retro_ogar_2636, retro_ogar_2928, retro_ogar_3088, retro_ogar_3350, retro_ogar_3419, retro_ogar_389, retro_ogar_777, retro_ogar_824, retro_ogar_829, retro_ogar_834,
Rattus norvegicus ENSRNOG00000014868 possible_ortholog 6 retrogenes
retro_rnor_1094, retro_rnor_1320, retro_rnor_1334, retro_rnor_2245, retro_rnor_2296, retro_rnor_984,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_46 84.85 64.71
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2. retro_vpac_173 77.33 73.53
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3. retro_vpac_209 95.05 99.02
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4. retro_vpac_292 76.24 97.06
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5. retro_vpac_299 87.88 96.08
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6. retro_vpac_329 64.77 85.29
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7. retro_vpac_410 78.64 100.00
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8. retro_vpac_443 79.00 98.04
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Download FASTA sequences of all ENSVPAG00000005805 retrocopies