RetrogeneDB ID: | retro_vpac_329 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_890:462006..462266(-) | ||
Located in intron of: | ENSVPAG00000006269 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPE1 | ||
Ensembl ID: | ENSVPAG00000005805 | ||
Aliases: | None | ||
Description: | heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269] |
Percent Identity: | 64.77 % |
Parental protein coverage: | 85.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTK-VVLD |
..VERS.A...TK.GIMLPE.SQ.KVLQAT.VAVG.GSKGK..EI.PVS.K...K...P.......VVLD | |
Retrocopy | LFVERSRAQILTKEGIMLPESSQRKVLQATAVAVGLGSKGKAEEI*PVSWKARNKRSSPRAAAIQ<VVLD |
Parental | DKDYFLFRDGDILGKYVD |
DKDYFL.R.GDILGKY.D | |
Retrocopy | DKDYFLSRAGDILGKYKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |