RetrogeneDB ID: | retro_btau_624 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 16:44899796..44900051(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPE1 | ||
Ensembl ID: | ENSBTAG00000012589 | ||
Aliases: | None | ||
Description: | 10 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P61603] |
Percent Identity: | 70.59 % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDKD |
..........KGGIM.P.KSQGK.LQAT..AVGS.SKGKG.EI.P.SVK.GDKVLLPEYGGTKVVL..KD | |
Retrocopy | INKCLKRSFSKGGIMFPGKSQGKLLQATTGAVGSDSKGKGKEI*PASVKAGDKVLLPEYGGTKVVLEEKD |
Parental | YFLFRDGDILGKYVD |
YFLFR.GD.LGK.VD | |
Retrocopy | YFLFRGGDLLGKHVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 164 .67 RPM |
ERP005899_muscle | 0 .00 RPM | 102 .31 RPM |
SRP017611_brain | 0 .00 RPM | 39 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 131 .11 RPM |
SRP017611_liver | 0 .00 RPM | 118 .62 RPM |
SRP030211_testis | 0 .00 RPM | 19 .08 RPM |