RetrogeneDB ID: | retro_dord_158 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_4050:280308..280559(-) | ||
Located in intron of: | ENSDORG00000007289 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hspe1 | ||
Ensembl ID: | ENSDORG00000011071 | ||
Aliases: | None | ||
Description: | heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680] |
Percent Identity: | 77.27 % |
Parental protein coverage: | 85.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VLVERSAAETVTKGGIMLPEKSQGKVLQ-ATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLD |
VL.ERS.AETVTKGGI.LPEKS.GKVLQ.AT.VA.GSGSK...G.I.P..VK.GDK.LLPEYG.TKVVL. | |
Retrocopy | VLIERSKAETVTKGGIVLPEKSPGKVLQ<ATLVAMGSGSK---GNIEPDGVKMGDKILLPEYGDTKVVLG |
Parental | DKDYFLFRDGDILGKYVE |
D.DYF.FRDGDILGKYVE | |
Retrocopy | DNDYFVFRDGDILGKYVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |