RetrogeneDB - Parental gene ENSCPOG00000022889 details

                            
>ENSCPOG00000022889
AATTCCAGCTCTCCTGCTACAGTCCCTCACCCCCTGAAAATGTACACGTGTTCTAGATTTGTCTTCACTCCATCCTTGGT

CAGGAGCACCTCCCAGCTGCTGAGCCGACCACTATCTGCAGTAGTGCTGAACCGACCAAAGACACCAACAGATGAGAGCC

TCAGCAGCTTTGCAGTCCCTCATCCCCTGACCTCACGTGTTCCTAGCCGCAGCTTCCAAACCAGCATCATTTCAAGAGAT

ATCGACACAGCAGCCAAGTTCATTGGAGCTGGCGCTGCCACAGTTGGGGTGGCTGGGTCTGGGGCTGGGATTGGGACTGT

GTTTGGAAGCCTCATCATTGGTTATGCCAGGAACCCTTCACTGAAGCAGCAGCTCTTCTCCTACGCCATTCTGGGCTTTG

CCCTCTCGGAGGCCATGGGGCTCTTCTGCCTGATGGTGGCCTTCCTCATCCTCTTCGCCATGTAA

Library	Parental gene expression (RPM)
SRP017611_brain	44 .40 RPM
SRP017611_kidney	117 .15 RPM
SRP017611_liver	61 .94 RPM
SRP040447_lung	70 .90 RPM
SRP040447_skeletal_muscle	156 .31 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000000619	possible_ortholog	18 retrogenes	retro_amel_1077, retro_amel_1113, retro_amel_1166, retro_amel_1309, retro_amel_1317, retro_amel_1322, retro_amel_1323, retro_amel_1610, retro_amel_1851, retro_amel_209, retro_amel_227, retro_amel_244, retro_amel_342, retro_amel_363, retro_amel_578, retro_amel_632, retro_amel_770, retro_amel_919,
Bos taurus	ENSBTAG00000005735	possible_ortholog	11 retrogenes	retro_btau_1405, retro_btau_1414, retro_btau_733, retro_btau_734, retro_btau_735, retro_btau_737, retro_btau_739, retro_btau_740, retro_btau_741, retro_btau_742, retro_btau_994,
Cavia porcellus	ENSCPOG00000006194	within_species_paralog	1 retrogene	retro_cpor_479,
Cavia porcellus	ENSCPOG00000009017	within_species_paralog	2 retrogenes	retro_cpor_43, retro_cpor_550,
Dipodomys ordii	ENSDORG00000002955	ortholog_one2many	1 retrogene	retro_dord_610,
Equus caballus	ENSECAG00000023021	possible_ortholog	2 retrogenes	retro_ecab_373, retro_ecab_793,
Erinaceus europaeus	ENSEEUG00000003051	possible_ortholog	1 retrogene	retro_eeur_79,
Echinops telfairi	ENSETEG00000005968	ortholog_one2many	40 retrogenes	retro_etel_1001, retro_etel_1007, retro_etel_103, retro_etel_1191, retro_etel_1203, retro_etel_1259, retro_etel_1288, retro_etel_1301, retro_etel_1327, retro_etel_1332, retro_etel_1354, retro_etel_1374, retro_etel_1402, retro_etel_1404, retro_etel_1420, retro_etel_1427, retro_etel_144, retro_etel_1533, retro_etel_1535, retro_etel_1591, retro_etel_1662, retro_etel_1684, retro_etel_1712, retro_etel_1771, retro_etel_2011, retro_etel_2127, retro_etel_2128, retro_etel_2142, retro_etel_2207, retro_etel_2216, retro_etel_260, retro_etel_475, retro_etel_636, retro_etel_639, retro_etel_652, retro_etel_72, retro_etel_735, retro_etel_736, retro_etel_796, retro_etel_847,
Felis catus	ENSFCAG00000001502	possible_ortholog	13 retrogenes	retro_fcat_1126, retro_fcat_1345, retro_fcat_1611, retro_fcat_1785, retro_fcat_1952, retro_fcat_226, retro_fcat_351, retro_fcat_353, retro_fcat_363, retro_fcat_405, retro_fcat_668, retro_fcat_958, retro_fcat_999,
Homo sapiens	ENSG00000135390	possible_ortholog	6 retrogenes	retro_hsap_1332, retro_hsap_2195, retro_hsap_2703, retro_hsap_3782, retro_hsap_4813, retro_hsap_499,
Gorilla gorilla	ENSGGOG00000015641	possible_ortholog	5 retrogenes	retro_ggor_1039, retro_ggor_1737, retro_ggor_1884, retro_ggor_2543, retro_ggor_2999,
Macropus eugenii	ENSMEUG00000004661	ortholog_one2many	67 retrogenes	retro_meug_1009, retro_meug_1030, retro_meug_113, retro_meug_1180, retro_meug_1187, retro_meug_1238, retro_meug_1258, retro_meug_1261, retro_meug_1265, retro_meug_1272, retro_meug_1284, retro_meug_1297, retro_meug_1322, retro_meug_1328, retro_meug_1361, retro_meug_1389, retro_meug_1413, retro_meug_1602, retro_meug_1626, retro_meug_1639, retro_meug_1653, retro_meug_1709, retro_meug_1752, retro_meug_177, retro_meug_1802, retro_meug_1843, retro_meug_1882, retro_meug_1885, retro_meug_1891, retro_meug_1903, retro_meug_1909, retro_meug_1919, retro_meug_193, retro_meug_1987, retro_meug_2014, retro_meug_2048, retro_meug_206, retro_meug_2073, retro_meug_2111, retro_meug_2115, retro_meug_2122, retro_meug_216, retro_meug_229, retro_meug_230, retro_meug_296, retro_meug_313, retro_meug_345, retro_meug_348, retro_meug_397, retro_meug_485, retro_meug_514, retro_meug_529, retro_meug_567, retro_meug_622, retro_meug_66, retro_meug_721, retro_meug_742, retro_meug_799, retro_meug_800, retro_meug_846, retro_meug_864, retro_meug_865, retro_meug_896, retro_meug_904, retro_meug_935, retro_meug_936, retro_meug_983,
Microcebus murinus	ENSMICG00000011686	possible_ortholog	4 retrogenes	retro_mmur_175, retro_mmur_373, retro_mmur_905, retro_mmur_977,
Myotis lucifugus	ENSMLUG00000011860	possible_ortholog	13 retrogenes	retro_mluc_106, retro_mluc_1215, retro_mluc_1335, retro_mluc_1337, retro_mluc_1496, retro_mluc_1633, retro_mluc_2151, retro_mluc_2186, retro_mluc_2257, retro_mluc_2273, retro_mluc_516, retro_mluc_575, retro_mluc_656,
Macaca mulatta	ENSMMUG00000016241	possible_ortholog	3 retrogenes	retro_mmul_1539, retro_mmul_2173, retro_mmul_439,
Mustela putorius furo	ENSMPUG00000005927	possible_ortholog	6 retrogenes	retro_mputfur_1650, retro_mputfur_290, retro_mputfur_335, retro_mputfur_631, retro_mputfur_814, retro_mputfur_947,
Mus musculus	ENSMUSG00000062683	possible_ortholog	1 retrogene	retro_mmus_6,
Nomascus leucogenys	ENSNLEG00000017686	possible_ortholog	4 retrogenes	retro_nleu_1576, retro_nleu_2187, retro_nleu_2403, retro_nleu_326,
Oryctolagus cuniculus	ENSOCUG00000008933	ortholog_one2many	4 retrogenes	retro_ocun_1933, retro_ocun_450, retro_ocun_762, retro_ocun_794,
Otolemur garnettii	ENSOGAG00000003611	possible_ortholog	4 retrogenes	retro_ogar_142, retro_ogar_1620, retro_ogar_166, retro_ogar_2415,
Ochotona princeps	ENSOPRG00000002978	ortholog_one2many	1 retrogene	retro_opri_671,
Procavia capensis	ENSPCAG00000008679	ortholog_one2many	3 retrogenes	retro_pcap_140, retro_pcap_189, retro_pcap_212,
Pongo abelii	ENSPPYG00000004586	possible_ortholog	7 retrogenes	retro_pabe_1211, retro_pabe_1212, retro_pabe_2073, retro_pabe_2255, retro_pabe_236, retro_pabe_3088, retro_pabe_3741,
Pan troglodytes	ENSPTRG00000005023	possible_ortholog	6 retrogenes	retro_ptro_1668, retro_ptro_1824, retro_ptro_2563, retro_ptro_3202, retro_ptro_376, retro_ptro_909,
Pteropus vampyrus	ENSPVAG00000012291	possible_ortholog	1 retrogene	retro_pvam_146,
Rattus norvegicus	ENSRNOG00000015320	possible_ortholog	6 retrogenes	retro_rnor_1286, retro_rnor_1490, retro_rnor_1939, retro_rnor_2699, retro_rnor_2738, retro_rnor_2910,
Sorex araneus	ENSSARG00000001027	ortholog_one2many	7 retrogenes	retro_sara_124, retro_sara_152, retro_sara_377, retro_sara_581, retro_sara_716, retro_sara_73, retro_sara_759,
Sarcophilus harrisii	ENSSHAG00000005726	ortholog_one2many	4 retrogenes	retro_shar_163, retro_shar_417, retro_shar_653, retro_shar_678,
Ictidomys tridecemlineatus	ENSSTOG00000008217	possible_ortholog	3 retrogenes	retro_itri_1404, retro_itri_399, retro_itri_436,
Tupaia belangeri	ENSTBEG00000005748	possible_ortholog	4 retrogenes	retro_tbel_1358, retro_tbel_1467, retro_tbel_2095, retro_tbel_789,
Tarsius syrichta	ENSTSYG00000003433	possible_ortholog	4 retrogenes	retro_tsyr_147, retro_tsyr_795, retro_tsyr_876, retro_tsyr_915,
Vicugna pacos	ENSVPAG00000000409	ortholog_one2many	1 retrogene	retro_vpac_105,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cpor_268	62.14	64.94	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cpor_492	69.23	99.35	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cpor_1495	83.77	98.05	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCPOG00000022889 retrocopies

Parental gene:	ATP5G2, ENSCPOG00000022889
Aliases:	None
Description:	None
Organism:	*Guinea Pig (Cavia porcellus)*
Coordinates:	scaffold_9:46121097..46126732(+)

Parental gene:

ATP5G2, ENSCPOG00000022889