RetrogeneDB ID: | retro_eeur_558 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_344039:5125..5792(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000015357 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.63 % |
Parental protein coverage: | 63.56 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SQDIKELQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQ |
SQDIKELQKELEQFAKLLKQKRITLGYTQADVGLTLG.LFGKVFSQTTIC.FEAL.LSFKN.CKL.PLLQ | |
Retrocopy | SQDIKELQKELEQFAKLLKQKRITLGYTQADVGLTLGILFGKVFSQTTICLFEAL*LSFKNKCKL*PLLQ |
Parental | KWVEEADNNENLQEICKAETLLQARKRKRTSIE-NRVRGNLESMYLQCPKPTLQQISHIAQQLGL-EKDV |
KWVEEADNNENLQEICK.E.LLQA..RKR.....NRVRGNLESMYLQCPKPTLQQISHIAQQLGL..KDV | |
Retrocopy | KWVEEADNNENLQEICKTEKLLQA--RKRKRTR<NRVRGNLESMYLQCPKPTLQQISHIAQQLGL<SKDV |
Parental | VRVWFCNRRQKGKRSNNDYSQREEFEAAGPPFSGGPISFPLAPGPHFGTPGYGGPHFTTLYSSVPLTEGE |
VRVWFCNR.QKGKRSNNDYSQREEFEAAGPPFSGGPISFPLAPGPHFGTPGYGGPHFTTLYSSV.LTEGE | |
Retrocopy | VRVWFCNRHQKGKRSNNDYSQREEFEAAGPPFSGGPISFPLAPGPHFGTPGYGGPHFTTLYSSVHLTEGE |
Parental | AFPSVPVTSLGSPMHSN |
AFPSVPVTSLGSP.HSN | |
Retrocopy | AFPSVPVTSLGSPTHSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .19 RPM | 0 .38 RPM |
SRP017611_liver | 0 .16 RPM | 0 .16 RPM |