Parental gene: | POU5F1, ENSOCUG00000017160 |
| Aliases: | POU5F1, OCT3, OCT4, OTF3, OTF4 |
| Description: | POU class 5 homeobox 1 (POU5F1), mRNA [Source:RefSeq mRNA;Acc:NM_001099957] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 12:20168657..20173865(-) |
>ENSOCUG00000017160
ATGGCGGGACACCTGGCCTCAGACTTCGCCTTCTCGCCCCCGCCGGGCGGCGGCGGCGATGGGCCTGGAGGGCCGGAGCC
AGGCTGGGTGGACCCCCGGACCTGGCTGAGCTTCCAAGGCCCTCCCGGTGGGCCCGCCATCGGGCCCGGGGTTGCACCGG
GCGCCGAGGTGTGGGGGATTCCCCCGTGCCCGCCGCCGTATGACTTCTGCGGAGCGATGGCGCACTGCGCCCCGCAGCTC
GCCGTGGGCCTCGTGCCTCAGGGCGGCCTGGAGACCTCTCAGCCGGAGGGCGAGGCAGGGGCCGGCGCGGGGAGCCTGTC
GGAGGGGCCCTCCCCTGAGCCCTGCGCTGCGCCTCTTGGTGCCGTGAAGCTGGAGAAGGAGAAGCTGGAGCAAACCCCCG
AGGAGGCGAATGACATGAAAGCTCTACAGAAAGAACTCGAGCAGTTTGCCAAGCTCCTGAAGCAGAAGAGGATCACTCTG
GGCTACACTCAGGCTGACGTGGGGCTCACCCTGGGGGTTCTCTTTGGAAAGGTGTTCAGCCAAACCACCATCTGCCGATT
CGAGGCCCTACAACTCAGTTTCAAGAACATGTGTAAGCTGCGGCCCCTGCTGCAGAAATGGGTGGAGGAGGCCGACAACA
ATGAGAACCTTCAGGAGATTTGCAAAGCGGAGACCCTCGTGCAGGCCCGGAAGAGAAAGCGAACGAGTATTGAGAACCGA
GTGAGAGGCAACTTGGAGAACATGTTCCTGCAGTGCCCGAAACCCACGCTGCAGCAGATCAGCCACATCGCCCAGCAGCT
GGGGCTCGAGAAAGACGTGGTCCGTGTGTGGTTCTGTAACCGGCGCCAGAAGGGCAAACGATCAAGCAGTGACTGTTCCC
AACGAGAGGATTTTGAGGCCACCGGCTCTCCCTTCGCAGGGGGGCCTATGTCTTTTCCTCTGGCACCAGGGCCCCATTTC
GGTACCCCAGGCTATGGCAGCCCTCACTTTGCTACCCTGTACTCGCCAATGCCCTTCCCTGAGGGGGAAGCCTTCCCCTC
TGTGCCTGTCCCTGCTCTGGGCTCCCCCATGCATTCAAACTGA
ATGGCGGGACACCTGGCCTCAGACTTCGCCTTCTCGCCCCCGCCGGGCGGCGGCGGCGATGGGCCTGGAGGGCCGGAGCC
AGGCTGGGTGGACCCCCGGACCTGGCTGAGCTTCCAAGGCCCTCCCGGTGGGCCCGCCATCGGGCCCGGGGTTGCACCGG
GCGCCGAGGTGTGGGGGATTCCCCCGTGCCCGCCGCCGTATGACTTCTGCGGAGCGATGGCGCACTGCGCCCCGCAGCTC
GCCGTGGGCCTCGTGCCTCAGGGCGGCCTGGAGACCTCTCAGCCGGAGGGCGAGGCAGGGGCCGGCGCGGGGAGCCTGTC
GGAGGGGCCCTCCCCTGAGCCCTGCGCTGCGCCTCTTGGTGCCGTGAAGCTGGAGAAGGAGAAGCTGGAGCAAACCCCCG
AGGAGGCGAATGACATGAAAGCTCTACAGAAAGAACTCGAGCAGTTTGCCAAGCTCCTGAAGCAGAAGAGGATCACTCTG
GGCTACACTCAGGCTGACGTGGGGCTCACCCTGGGGGTTCTCTTTGGAAAGGTGTTCAGCCAAACCACCATCTGCCGATT
CGAGGCCCTACAACTCAGTTTCAAGAACATGTGTAAGCTGCGGCCCCTGCTGCAGAAATGGGTGGAGGAGGCCGACAACA
ATGAGAACCTTCAGGAGATTTGCAAAGCGGAGACCCTCGTGCAGGCCCGGAAGAGAAAGCGAACGAGTATTGAGAACCGA
GTGAGAGGCAACTTGGAGAACATGTTCCTGCAGTGCCCGAAACCCACGCTGCAGCAGATCAGCCACATCGCCCAGCAGCT
GGGGCTCGAGAAAGACGTGGTCCGTGTGTGGTTCTGTAACCGGCGCCAGAAGGGCAAACGATCAAGCAGTGACTGTTCCC
AACGAGAGGATTTTGAGGCCACCGGCTCTCCCTTCGCAGGGGGGCCTATGTCTTTTCCTCTGGCACCAGGGCCCCATTTC
GGTACCCCAGGCTATGGCAGCCCTCACTTTGCTACCCTGTACTCGCCAATGCCCTTCCCTGAGGGGGAAGCCTTCCCCTC
TGTGCCTGTCCCTGCTCTGGGCTCCCCCATGCATTCAAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 0 .00 RPM |
| SRP017611_kidney | 0 .00 RPM |
| SRP017611_brain | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000010377 | ortholog_many2many | 3 retrogenes | |
| Bos taurus | ENSBTAG00000021111 | ortholog_many2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000000485 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000019789 | ortholog_many2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000003949 | possible_ortholog | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000009549 | ortholog_many2many | 1 retrogene | |
| Equus caballus | ENSECAG00000008967 | ortholog_one2many | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000015357 | ortholog_one2many | 2 retrogenes | |
| Felis catus | ENSFCAG00000001078 | ortholog_one2many | 3 retrogenes | |
| Gallus gallus | ENSGALG00000026574 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000027662 | ortholog_one2many | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000013221 | ortholog_one2many | 3 retrogenes | |
| Meleagris gallopavo | ENSMGAG00000000739 | possible_ortholog | 1 retrogene | |
| Microcebus murinus | ENSMICG00000001511 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000011028 | ortholog_one2many | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000001202 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000024406 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000000621 | ortholog_one2many | 3 retrogenes | |
| Ochotona princeps | ENSOPRG00000003926 | ortholog_one2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000017210 | ortholog_one2many | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000017953 | ortholog_one2many | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000007334 | ortholog_one2many | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000046487 | ortholog_one2many | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000001393 | ortholog_one2many | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000026103 | ortholog_many2many | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000013044 | ortholog_one2many | 4 retrogenes | |
| Taeniopygia guttata | ENSTGUG00000002412 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000007340 | ortholog_one2many | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_463 | 54.22 | 63.64 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_1175 | 77.12 | 66.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1696 | 67.86 | 54.83 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000017160 retrocopies