RetrogeneDB ID: | retro_itri_1705 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393647.1:271188..271832(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000026103 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.37 % |
Parental protein coverage: | 60.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAGHLASDFAFSPPPG-GGGDGPGGPEPGWIDHRTWLSFPGPPGGPVIGPGVGPGSEVWGIPSYPPPHEF |
MAGHLAS.FAF.PPPG..GGDGPGG.E.GWID....LSFP..P.GP.IGPG.GPG.EV.GIPS.PPP.EF | |
Retrocopy | MAGHLASNFAFWPPPG>WGGDGPGGSEQGWIDPQILLSFPHLPDGPEIGPGIGPGLEV*GIPSCPPPYEF |
Parental | CGGMAYCGPQVGKGLIPHGGLETSQPEVEVGAGMESNSEGASPEPCIAHPAVVKVEKEKMDQNPE-ESQD |
CGG.AY..PQVGKGLIPHGGL.TSQPE..VGAGMESNSEGASPEPCIAHPA.VKVE.EKMDQNP..ESQD | |
Retrocopy | CGGVAYSRPQVGKGLIPHGGLQTSQPESKVGAGMESNSEGASPEPCIAHPAEVKVEEEKMDQNPQ>ESQD |
Parental | IQALQKELEEFAKLLKQKRINLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWV |
IQALQKE...F.KLLKQKRI.L.Y.Q.D.GLTLGVLFGKV.SQTTIC.FEALQLSFKN.CKL..LLQKWV | |
Retrocopy | IQALQKE---FSKLLKQKRIPLVYNQDDMGLTLGVLFGKVYSQTTICCFEALQLSFKNLCKLWLLLQKWV |
Parental | EEADNNENL |
EEADNNENL | |
Retrocopy | EEADNNENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |