RetrogeneDB ID:

retro_ggor_295

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:1:134428163..134429243(+)
Located in intron of:ENSGGOG00000011218
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000204531
Ensembl ID:ENSGGOG00000027662
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_295
ATGGCGGGACACCTGGCTTCGGATGCCTGCCTTCTTGCCCCCTCCAGGCGGTGGAGGTGATGGGCCAGGGAGGCCGGAGC
CGGGCTGGGTTGATCCTCGGACCTGGCTAAGCTTCCAAGGCCCTCCTGGAGGGCCAGGAATCAGGCCGGGAGTTGGGTCA
GGCTCTGAGGTGTGGGGGATTCCCCCATGCCCCCCGCTGTATGAGTTCTGTGGGGGGATGGCGTACTGTGGGCCTCAGGT
GGGAGTGGGGCTAGTGCCCCAAGGCGGCTTGGAGACCTCTCAGCCTGAGGGCGAAGCAGGAGTCGGGGTGGAGAGCAACT
CCAATGGGGCCTCCCCGGAACCCTGCACTGTCCCACCTGGTGCCGTGAAGCTGGAGAAGGAGAAGCTAGAGCAAAACCCG
TAGGAGTCCCAGGACATCAAAGCTCTGCAGAAAGAACTCGAGCAATTTGCCAAGCTCCTGAAGCAGAAGAGGATCACCCT
GGGATATACACAGGCCGATGTGGGGCTCATCCTGGGGGTTCTATTTGGGAAGGTGTTCAGCCAAACGACCATCTGCCGCT
TTGAGGCTCTGCAGCTTAGCTTCAAGAACATGTGTAAGCTGCGGCCCTTGCTGCAGAAGTGGGTGGAGGAAGCTGACAAC
AATGAAAATCTTCAGGAGACATGCAAAGCAGAAACCCTCTTGCAGGCCCGAAAGAGAAAGCGAACCAGTATCGAGAACCG
AGTGAGAGGCAACCTGGAGAATTTGTTCCTGCAGTGCTCGAAACCCACGCTGCAGCAGATCAGCCACATCGCCCAGCAGC
TTGGGCTCGAGAAGGATGTGGTTCGAGTGTGGTTCTGTAACCGGTGCCAGAAAGGCAAGCAATCAAGCAGCGACTATGCA
TAACGAGAGGATTTTGAAGCTGCTGGGTCTCCTTTCTCAGGGGGACCAGTGTCCTTTCCTCTGGCCCCAGGGCCCCATTT
TGGTGCCCCAGGCTATGGGAGCCCTCACTTCACTGCACTGTACTCCTCGGTCCCTTTCCCTGAGTGGGAAGCCTTTCCCC
CGTCTCCGTCACCACTCTGGGCTCTCCCATGCATTCAAAC

ORF - retro_ggor_295 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.2 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMAGHLASDF-AFSPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPGAGPGSEVWGIPPCPPPYEF
MAGHLASD..AF.PPPGGGGDGPG.PEPGWVDPRTWLSFQGPPGGPGI.PG.G.GSEVWGIPPCPP.YEF
RetrocopyMAGHLASDA>AFLPPPGGGGDGPGRPEPGWVDPRTWLSFQGPPGGPGIRPGVGSGSEVWGIPPCPPLYEF
ParentalCGGMAYCGPQVGVGLVPQGGLETSQPEGEAGVGVESNSDGASPEPCTVTPGAVKLEKEKLEQNPEESQDI
CGGMAYCGPQVGVGLVPQGGLETSQPEGEAGVGVESNS.GASPEPCTV.PGAVKLEKEKLEQNP.ESQDI
RetrocopyCGGMAYCGPQVGVGLVPQGGLETSQPEGEAGVGVESNSNGASPEPCTVPPGAVKLEKEKLEQNP*ESQDI
ParentalKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVE
KALQKELEQFAKLLKQKRITLGYTQADVGL.LGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVE
RetrocopyKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVE
ParentalEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFC
EADNNENLQE.CKAETL.QARKRKRTSIENRVRGNLENLFLQC.KPTLQQISHIAQQLGLEKDVVRVWFC
RetrocopyEADNNENLQETCKAETLLQARKRKRTSIENRVRGNLENLFLQCSKPTLQQISHIAQQLGLEKDVVRVWFC
ParentalNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFP-PV
NR.QKGK.SSSDYA.REDFEAAGSPFSGGPVSFPLAPGPHFG.PGYGSPHFTALYSSVPFPE.EAFP.PV
RetrocopyNRCQKGKQSSSDYA*REDFEAAGSPFSGGPVSFPLAPGPHFGAPGYGSPHFTALYSSVPFPEWEAFP<PV
ParentalSVTTLGSPMHSN
SVTTLGSPMHSN
RetrocopySVTTLGSPMHSN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 0 .48 RPM
SRP007412_cerebellum 0 .28 RPM 0 .51 RPM
SRP007412_heart 0 .00 RPM 0 .09 RPM
SRP007412_kidney 0 .20 RPM 0 .33 RPM
SRP007412_liver 0 .13 RPM 0 .13 RPM
SRP007412_testis 0 .21 RPM 0 .21 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_295 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_295 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Pan troglodytes retro_ptro_204

Parental genes homology:
Parental genes homology involve 25 parental genes, and 63 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000103773 retrocopies
Bos taurus ENSBTAG000000211112 retrocopies
Canis familiaris ENSCAFG000000004851 retrocopy
Callithrix jacchus ENSCJAG000000197891 retrocopy
Dipodomys ordii ENSDORG000000095491 retrocopy
Equus caballus ENSECAG000000089671 retrocopy
Erinaceus europaeus ENSEEUG000000153572 retrocopies
Felis catus ENSFCAG000000010783 retrocopies
Gorilla gorilla ENSGGOG00000027662 3 retrocopies
retro_ggor_2275, retro_ggor_295 , retro_ggor_852,
Macropus eugenii ENSMEUG000000132213 retrocopies
Microcebus murinus ENSMICG000000015111 retrocopy
Myotis lucifugus ENSMLUG000000110283 retrocopies
Mustela putorius furoENSMPUG000000012022 retrocopies
Mus musculus ENSMUSG000000244062 retrocopies
Oryctolagus cuniculus ENSOCUG000000171603 retrocopies
Otolemur garnettii ENSOGAG000000006213 retrocopies
Ochotona princeps ENSOPRG000000039262 retrocopies
Pongo abelii ENSPPYG000000172103 retrocopies
Pan troglodytes ENSPTRG000000179535 retrocopies
Pteropus vampyrus ENSPVAG000000073342 retrocopies
Rattus norvegicus ENSRNOG000000464874 retrocopies
Sus scrofa ENSSSCG000000013932 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000261033 retrocopies
Tupaia belangeri ENSTBEG000000130444 retrocopies
Tarsius syrichta ENSTSYG000000073404 retrocopies



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