RetrogeneDB ID: | retro_eeur_196 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_206069:4420..5092(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000015357 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.44 % |
Parental protein coverage: | 63.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QDIKELQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQK |
.D.....KE.EQ.AK.L.QKR.TLGY.QADVG...G.LFGKV.SQTTICRFEA.QLS..NM.KLRPLL.. | |
Retrocopy | EDVSAIEKEMEQLAKELRQKRMTLGYSQADVGFAIGALFGKVLSQTTICRFEAQQLSLANMWKLRPLLKM |
Parental | WVEEADNNENLQEICKAETLL-QARKRKRTSIENRVRGNLESMYLQCPKPTLQQISHIAQQLGLEKDVVR |
W.EE.D...N....C..E..L.QARK..R.S.E.R...NLE...LQCP.PT.QQISHIA.QL.L.KD.VR | |
Retrocopy | WLEEVD-TKNFLGLCRMEMILKQARKQRRASRERRIGNNLEKLFLQCPRPTPQQISHIAGQLRLQKDLVR |
Parental | VWFCNRRQKGKRSNNDYSQREEFEAAGPPFSGGPISFPLAPGPHFGTPGYGGPHFTTLYSSVPLTEGEAF |
VWF.NR.....R..ND.S..EE.......F.G.P..FPLAP..HF....YGGP.FT.LYSS.P...G..F | |
Retrocopy | VWFYNRSKMSSRPTNDFSPSEEVGPVELSFPGAPVYFPLAPRFHFSSSHYGGPYFTPLYSSAPFPVGGTF |
Parental | PSVPVTSLGSPMHSN |
.S.PV..LG.P..S. | |
Retrocopy | LSAPVNTLGLPRLSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .38 RPM | 0 .38 RPM |
SRP017611_liver | 0 .00 RPM | 0 .16 RPM |