RetrogeneDB ID: | retro_itri_951 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393348.1:7796696..7797489(+) | ||
Located in intron of: | ENSSTOG00000005128 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000026103 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.78 % |
Parental protein coverage: | 74.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LASDFAFSPPPGGGGDGPGGPEPGWIDHRTWLSFPGPPGGPVIGPGVGPGSEVWGIPSYPP-PHEFCGGM |
.ASDFAFSPP.GGGGDG.GGPEP..ID..TWLSFPGPPG....GPG.GPGSEVWGIPS.P..P.EFCG.M | |
Retrocopy | MASDFAFSPPLGGGGDGSGGPEPSRIDPQTWLSFPGPPG----GPGIGPGSEVWGIPSLPS>PYEFCGEM |
Parental | AYCGPQVGKGLIPHGGLETSQPEVEV-GAGMESNSEGASPEPCIAHPAVVKVEK-EKMDQNPEESQDIQA |
AYCGPQVG.GLIPHG.LE.SQPE.E..GAGMESNSEGASPEPCIAHPAVVKVE..EK.D.NPEESQDIQA | |
Retrocopy | AYCGPQVGMGLIPHGSLESSQPEMEG<GAGMESNSEGASPEPCIAHPAVVKVER<EKVD*NPEESQDIQA |
Parental | LQKELEEFAKLLKQKRINLGYTQADVGLTLG-VLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEE |
.QKELE.FAKLLKQKRINLGYTQADVGLTLG.VLFGKVFSQTT.CRFEALQLSFKNMCKLRP.LQKWVEE | |
Retrocopy | WQKELEKFAKLLKQKRINLGYTQADVGLTLG<VLFGKVFSQTTTCRFEALQLSFKNMCKLRPMLQKWVEE |
Parental | ADNNENLQEICKAEALLQARKRKRTSIENRVRGNLENMFLQCPKPTLQQISHIAEQLGLEKDV |
ADNN.NLQ.ICKAE.LLQARKRKRT.IE..VRGNLE.MFLQ.PK..LQ.ISH.AE.L.L.KDV | |
Retrocopy | ADNNKNLQKICKAETLLQARKRKRTNIETGVRGNLEKMFLQYPKSILQEISHTAEHLELKKDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |