Parental gene: | Pou5f1, ENSRNOG00000046487 |
| Aliases: | None |
| Description: | POU class 5 homeobox 1 [Source:RefSeq peptide;Acc:NP_001009178] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 20:5833973..5838736(-) |
>ENSRNOG00000046487
ATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCTGGTGGGGGTGATGGGTCAGCAGGGCTGGAGCCGGG
CTGGGTGGACCCTCGAACCTGGCTAAGCTTCCAGGGGCCTCCAAGTGGGCCTGGAATCGGACCAGGTTCAGAGGTGCTGG
GGATCTCCCCGTGTCCCCCAGCATACGAGTTCTGTGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTC
CCCCAAGTTGGCGTGGAGACTCTGCAGCCCGAGGGCCAGGCAGGAGCACGAGTGGAGAGCAACTCGGAGGGAGCCTCCTC
TGGGCCCTGTACTGCCCGCCCCAGCGCCGTGAAGTTGGAGAAGGTGGAACCTAGTCCCGAGGAGTCCCAGGATATGAAAG
CCCTGCAGAAGGAGCTAGAGCAGTTTGCCAAGCTGCTGAAACAGAAGAGGATCACCTTGGGGTACACCCAGGCCGACGTG
GGGCTCACCCTGGGCGTTCTCTTTGGAAAGGTGTTCAGCCAGACAACCATCTGCCGCTTCGAGGCCCTGCAGCTCAGCCT
TAAGAACATGTGTAAGCTGCGGCCCCTGCTGGAGAAGTGGGTGGAGGAAGCTGACAACAACGAGAACCTTCAGGAGATAT
GCAAATCGGAGACCCTGGTGCAGGCCCGGAAGAGAAAGCGGACTAGCATTGAGAACCGTGTGAGGTGGAACCTGGAGAAC
ATGTTTCTGCAGTGCCCGAAGCCCTCCCTGCAGCAGATCACTAGCATTGCCAAGCAGCTTGGGCTGGAGAGGGATGTGGT
TCGAGTGTGGTTCTGTAACCGGCGCCAGAAGGGGAAAAGATCGAGCATTGAATATTCCCAACGAGAAGAGTATGAGGCCG
CGGGGAAACCTTTCCCAGGGGGGGCTGTGTCCTTTCCTCTGCCCCCAGGCCCCCACTTTGGTGCTCCAGGCTATGGGAGC
CCCCATTTCACCACACTCTACTCGGTCCCTTTTCCTGAGGGCGAGGCCTTTCCCTCTGTTCCTGTCACTGCTCTGGGCTC
TCCCATGCATTCAAACTGA
ATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCTGGTGGGGGTGATGGGTCAGCAGGGCTGGAGCCGGG
CTGGGTGGACCCTCGAACCTGGCTAAGCTTCCAGGGGCCTCCAAGTGGGCCTGGAATCGGACCAGGTTCAGAGGTGCTGG
GGATCTCCCCGTGTCCCCCAGCATACGAGTTCTGTGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTC
CCCCAAGTTGGCGTGGAGACTCTGCAGCCCGAGGGCCAGGCAGGAGCACGAGTGGAGAGCAACTCGGAGGGAGCCTCCTC
TGGGCCCTGTACTGCCCGCCCCAGCGCCGTGAAGTTGGAGAAGGTGGAACCTAGTCCCGAGGAGTCCCAGGATATGAAAG
CCCTGCAGAAGGAGCTAGAGCAGTTTGCCAAGCTGCTGAAACAGAAGAGGATCACCTTGGGGTACACCCAGGCCGACGTG
GGGCTCACCCTGGGCGTTCTCTTTGGAAAGGTGTTCAGCCAGACAACCATCTGCCGCTTCGAGGCCCTGCAGCTCAGCCT
TAAGAACATGTGTAAGCTGCGGCCCCTGCTGGAGAAGTGGGTGGAGGAAGCTGACAACAACGAGAACCTTCAGGAGATAT
GCAAATCGGAGACCCTGGTGCAGGCCCGGAAGAGAAAGCGGACTAGCATTGAGAACCGTGTGAGGTGGAACCTGGAGAAC
ATGTTTCTGCAGTGCCCGAAGCCCTCCCTGCAGCAGATCACTAGCATTGCCAAGCAGCTTGGGCTGGAGAGGGATGTGGT
TCGAGTGTGGTTCTGTAACCGGCGCCAGAAGGGGAAAAGATCGAGCATTGAATATTCCCAACGAGAAGAGTATGAGGCCG
CGGGGAAACCTTTCCCAGGGGGGGCTGTGTCCTTTCCTCTGCCCCCAGGCCCCCACTTTGGTGCTCCAGGCTATGGGAGC
CCCCATTTCACCACACTCTACTCGGTCCCTTTTCCTGAGGGCGAGGCCTTTCCCTCTGTTCCTGTCACTGCTCTGGGCTC
TCCCATGCATTCAAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 0 .00 RPM |
| SRP017611_kidney | 0 .00 RPM |
| SRP017611_brain | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000010377 | ortholog_one2many | 3 retrogenes | |
| Bos taurus | ENSBTAG00000021111 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000000485 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000019789 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000009549 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000008967 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000015357 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000001078 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000027662 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000013221 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000001511 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000011028 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000001202 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000024406 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000017160 | ortholog_one2many | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000000621 | ortholog_one2one | 3 retrogenes | |
| Ochotona princeps | ENSOPRG00000003926 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000017210 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000017953 | ortholog_one2one | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000007334 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000001393 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000026103 | ortholog_one2many | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000013044 | ortholog_one2one | 4 retrogenes | |
| Tarsius syrichta | ENSTSYG00000007340 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_921 | 89.91 | 92.61 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_1474 | 56.44 | 63.35 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_2186 | 63.55 | 83.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_2968 | 55.09 | 79.26 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000046487 retrocopies