RetrogeneDB ID: | retro_itri_1076 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393369.1:3532788..3533742(-) | ||
Located in intron of: | ENSSTOG00000007885 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000026103 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.51 % |
Parental protein coverage: | 88.33 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MAGHLASDFAFSPPPGGGGDGPGGPEPGWIDHRTWLSFPGPPGGPVIGPGVGPGSEVWGIPSYPPPHEFC |
MAGHLA.DFAFSPPPGGGGDGPGGPEPGWID.RTWLSFPGPPGGP.IGPGVGPGSE.WGIPS.PPP.EFC | |
Retrocopy | MAGHLALDFAFSPPPGGGGDGPGGPEPGWIDPRTWLSFPGPPGGPGIGPGVGPGSERWGIPSCPPPYEFC |
Parental | GGMAYCGPQVGKGLIPHGGLETSQPEVEVGAGMESNSEGASPEPCIAHPAVVKVEKEKMDQNPEESQDIQ |
GGMAYCGPQVG.GLIPH.GLETSQPE.EVGAGME.NSE.ASPEPCIAHPAVVKVEKEK.DQN.EESQDIQ | |
Retrocopy | GGMAYCGPQVGMGLIPHSGLETSQPEIEVGAGMEGNSEEASPEPCIAHPAVVKVEKEKVDQNHEESQDIQ |
Parental | ALQKELEEFAKLLKQKRINLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEE |
AL.KELEEFAKLLKQKRINLGYTQADVGL.LGVLFGKVFSQ.TICRFEALQ.SFKNMCKL.PLLQKWVEE | |
Retrocopy | AL*KELEEFAKLLKQKRINLGYTQADVGLSLGVLFGKVFSQMTICRFEALQFSFKNMCKLQPLLQKWVEE |
Parental | ADNNENLQEICKAEALLQARKRKRTSIENRVRGNLENMFLQCPKPTLQQISHIAEQLGLEKDVVRVWFCN |
ADNNENLQEICKAE.LLQARKRKRTS.EN.VRGNLENMFLQCPKPTLQQISH.AEQLGLEKDVV..WFCN | |
Retrocopy | ADNNENLQEICKAETLLQARKRKRTSMENPVRGNLENMFLQCPKPTLQQISHTAEQLGLEKDVV*LWFCN |
Parental | RRQKGKRSSIDYSQREDFEAAASPFSGGPVSFPLAPGP |
RRQKGK.SSIDYSQ.EDFEAAASPFSG.PVSFPLAPGP | |
Retrocopy | RRQKGK*SSIDYSQQEDFEAAASPFSGRPVSFPLAPGP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |