RetrogeneDB ID: | retro_ptro_204 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:133686985..133687707(+) | ||
Located in intron of: | ENSPTRG00000001425 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POU5F1 | ||
Ensembl ID: | ENSPTRG00000017953 | ||
Aliases: | POU5F1, OTF-3, oct-3 | ||
Description: | Pan troglodytes POU class 5 homeobox 1 (POU5F1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252041] |
Percent Identity: | 96.28 % |
Parental protein coverage: | 66.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GAVKLEKEKLEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEA |
GAVKLEKEKLEQNP.ESQ.IKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEA | |
Retrocopy | GAVKLEKEKLEQNPQESQNIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEA |
Parental | LQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQ |
LQLSFKNMCKLRPLLQKWVEEADNNENLQE.CKAETL.QARKRKRTSIENRVRGNLENLFLQCPKPTLQQ | |
Retrocopy | LQLSFKNMCKLRPLLQKWVEEADNNENLQETCKAETLLQARKRKRTSIENRVRGNLENLFLQCPKPTLQQ |
Parental | ISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPH |
ISHIAQQLGLEKDVVRVWFCNR.QKGK.SSSDYA.REDFEAAGSPFSG.PVSFPLAPGPHFGTPGYGSPH | |
Retrocopy | ISHIAQQLGLEKDVVRVWFCNRCQKGKQSSSDYA*REDFEAAGSPFSGVPVSFPLAPGPHFGTPGYGSPH |
Parental | FTALYSSVPFPEGEAFP-PVSVTTLGSPMHSN |
FTALYSSVPFPEGEAFP.PVSVTTLGSPMHSN | |
Retrocopy | FTALYSSVPFPEGEAFP<PVSVTTLGSPMHSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 1 .05 RPM |
SRP007412_cerebellum | 0 .22 RPM | 0 .79 RPM |
SRP007412_heart | 0 .03 RPM | 0 .15 RPM |
SRP007412_kidney | 0 .21 RPM | 0 .76 RPM |
SRP007412_liver | 0 .00 RPM | 0 .26 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_295 |