Parental gene:

POU5F1, ENSSSCG00000001393

Aliases:POU5F1, OCT3, OCT4, Oct-4
Description:Sus scrofa POU class 5 homeobox 1 (POU5F1), mRNA. [Source:RefSeq mRNA;Acc:NM_001113060]
Organism:Pig (Sus scrofa)
Coordinates:7:27262623..27268634(+)


>ENSSSCG00000001393
ATGGCGGGACACCTGGCTTCCGACTTCGCCTTCTCGCCCCCGCCGGGCGGTGGAGGCGATGGGCCGGGAGGGCCGGAGCC
GGGCTGGGTTGATCCTCGGACCTGGCTGAGCTTCCAAGGGCCTCCCGGTGGGTCAGGGATCGGGCCGGGGGTTGGGCCGG
GCGCCGAGGTGTGGGGGCTTCCCGCGTGCCCCCCGCCCTATGACTTCTGCGGAGGGATGGCCTACTGCGCACCTCAGGTC
GGAGTGGGGCTGGTGCCCCAGGGCGGCCTGGAGACCCCTCAGCCCGAGGGCGAGGCGGGGGCCGGGGTGGAGAGCAACTC
CGAGGGGGCCTCCCCCGAGCCCTGTGCCGCCCCCGCTGGCGCCGCGAAGCTGGACAAGGAGAAGCTGGAGCCGAACCCCG
AGGAGTCCCAGGACATCAAAGCGCTTCAGAAAGATCTCGAACAATTTGCCAAGCTCCTAAAGCAGAAGAGGATCACCCTG
GGATATACCCAGGCCGATGTGGGGCTCACTTTGGGGGTTCTCTTTGGGAAGGTGTTCAGCCAAACGACCATCTGCCGTTT
TGAGGCTTTGCAGCTCAGTTTCAAGAACATGTGTAAGCTGCGGCCCCTGCTGCAGAAGTGGGTGGAGGAAGCTGACAACA
ACGAGAATCTGCAGGAGATATGCAAGGCAGAGACCCTCGTGCAGGCCCGGAAGAGAAAGCGGACAAGTATCGAGAACCGA
GTGAGAGGCAACCTGGAGAGCATGTTCCTGCAGTGCCCAAAGCCCACTCTGCAGCAGATCAGCCACATCGCCCAGCAGCT
CGGGCTAGAGAAGGATGTGGTCCGCGTGTGGTTCTGCAACCGTCGCCAGAAGGGCAAACGATCAAGCAGTGACTATTCGC
AACGAGAGGATTTTGAGGCTGCTGGGTCTCCTTTCCCAGGGGGACCAGTATCCTTTCCTCTGGCGCCAGGGCCCCATTTT
GGTACCCCAGGCTATGGGGGCCCTCACTTCACCACCCTGTACTCCTCGGTCCCATTCCCTGAGGGTGAGGCCTTTCCCTC
GGTGTCTGTCACCCCTCTGGGCTCCCCCATGCATTCAAACTGA

Library Parental gene expression (RPM)
SRP014902_placenta 0 .27 RPM
SRP014902_testis 0 .85 RPM
SRP018288_heart 0 .03 RPM
SRP018288_kidney 0 .00 RPM
SRP018288_liver 0 .00 RPM
SRP018288_lung 0 .00 RPM
SRP018856_adipose 0 .02 RPM
SRP035408_brain 0 .00 RPM
SRP035408_liver 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010377 ortholog_one2many 3 retrogenes
retro_amel_1057, retro_amel_1213, retro_amel_1616,
Bos taurus ENSBTAG00000021111 ortholog_one2many 2 retrogenes
retro_btau_1576, retro_btau_951,
Canis familiaris ENSCAFG00000000485 ortholog_one2one 1 retrogene
retro_cfam_1538,
Callithrix jacchus ENSCJAG00000019789 ortholog_one2many 1 retrogene
retro_cjac_123,
Dipodomys ordii ENSDORG00000009549 ortholog_one2many 1 retrogene
retro_dord_65,
Equus caballus ENSECAG00000008967 ortholog_one2one 1 retrogene
retro_ecab_301,
Erinaceus europaeus ENSEEUG00000015357 ortholog_one2one 2 retrogenes
retro_eeur_196, retro_eeur_558,
Felis catus ENSFCAG00000001078 ortholog_one2one 3 retrogenes
retro_fcat_1372, retro_fcat_1422, retro_fcat_275,
Gorilla gorilla ENSGGOG00000027662 ortholog_one2one 3 retrogenes
retro_ggor_2275, retro_ggor_295, retro_ggor_852,
Macropus eugenii ENSMEUG00000013221 ortholog_one2one 3 retrogenes
retro_meug_1146, retro_meug_1475, retro_meug_692,
Microcebus murinus ENSMICG00000001511 ortholog_one2one 1 retrogene
retro_mmur_1423,
Myotis lucifugus ENSMLUG00000011028 ortholog_one2one 3 retrogenes
retro_mluc_1465, retro_mluc_2382, retro_mluc_515,
Mustela putorius furo ENSMPUG00000001202 ortholog_one2one 2 retrogenes
retro_mputfur_253, retro_mputfur_96,
Mus musculus ENSMUSG00000024406 ortholog_one2one 2 retrogenes
retro_mmus_2201, retro_mmus_250,
Oryctolagus cuniculus ENSOCUG00000017160 ortholog_one2many 3 retrogenes
retro_ocun_1175, retro_ocun_1696, retro_ocun_463,
Otolemur garnettii ENSOGAG00000000621 ortholog_one2one 3 retrogenes
retro_ogar_1406, retro_ogar_1436, retro_ogar_2229,
Ochotona princeps ENSOPRG00000003926 ortholog_one2one 2 retrogenes
retro_opri_1213, retro_opri_556,
Pongo abelii ENSPPYG00000017210 ortholog_one2one 3 retrogenes
retro_pabe_2761, retro_pabe_3294, retro_pabe_898,
Pan troglodytes ENSPTRG00000017953 ortholog_one2one 5 retrogenes
retro_ptro_1798, retro_ptro_204, retro_ptro_2132, retro_ptro_2721, retro_ptro_733,
Pteropus vampyrus ENSPVAG00000007334 ortholog_one2one 2 retrogenes
retro_pvam_724, retro_pvam_74,
Rattus norvegicus ENSRNOG00000046487 ortholog_one2one 4 retrogenes
retro_rnor_1474, retro_rnor_2186, retro_rnor_2968, retro_rnor_921,
Ictidomys tridecemlineatus ENSSTOG00000026103 ortholog_one2many 3 retrogenes
retro_itri_1076, retro_itri_1705, retro_itri_951,
Tupaia belangeri ENSTBEG00000013044 ortholog_one2one 4 retrogenes
retro_tbel_3628, retro_tbel_3718, retro_tbel_3779, retro_tbel_4614,
Tarsius syrichta ENSTSYG00000007340 ortholog_one2one 4 retrogenes
retro_tsyr_1508, retro_tsyr_1630, retro_tsyr_814, retro_tsyr_817,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_252 66.39 99.72
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2. retro_sscr_678 56.33 62.78
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Download FASTA sequences of all ENSSSCG00000001393 retrocopies